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BioLiP Library
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6eee:A (2.3) BS01 J4V 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832 MOAD: Ki=28.9nM
    PDBbind: -logKd/Ki=7.54, Ki=28.9nM
    2 6eee:A (2.3) BS02 CO3 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    3 6eee:A (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    4 6eee:B (2.3) BS01 J4V 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832 MOAD: Ki=28.9nM
    5 6eee:B (2.3) BS02 CO3 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    6 6eee:B (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    7 6eee:C (2.3) BS01 J4V 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832 MOAD: Ki=28.9nM
    8 6eee:C (2.3) BS02 CO3 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    9 6eee:C (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    10 6eee:D (2.3) BS01 J4V 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832 MOAD: Ki=28.9nM
    11 6eee:D (2.3) BS02 CO3 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    12 6eee:D (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    13 6eee:E (2.3) BS01 J4V 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832 MOAD: Ki=28.9nM
    14 6eee:E (2.3) BS02 CO3 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    15 6eee:E (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    16 6eee:F (2.3) BS01 J4V 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832 MOAD: Ki=28.9nM
    PDBbind: -logKd/Ki=7.54, Ki=28.9nM
    17 6eee:F (2.3) BS02 CO3 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    18 6eee:F (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    19 6eee:G (2.3) BS01 J4V 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832 MOAD: Ki=28.9nM
    20 6eee:G (2.3) BS02 CO3 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    21 6eee:G (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    22 6eee:H (2.3) BS01 J4V 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832 MOAD: Ki=28.9nM
    23 6eee:H (2.3) BS02 CO3 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    24 6eee:H (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    25 6eee:I (2.3) BS01 J4V 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832 MOAD: Ki=28.9nM
    26 6eee:I (2.3) BS02 CO3 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    27 6eee:I (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    28 6eee:J (2.3) BS01 J4V 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832 MOAD: Ki=28.9nM
    29 6eee:J (2.3) BS02 CO3 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    30 6eee:J (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    31 6eee:K (2.3) BS01 J4V 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832 MOAD: Ki=28.9nM
    32 6eee:K (2.3) BS02 CO3 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    33 6eee:K (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    34 6eee:L (2.3) BS01 J4V 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832 MOAD: Ki=28.9nM
    35 6eee:L (2.3) BS02 CO3 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    36 6eee:L (2.3) BS03 ZN 3.4.11.1 GO:0005737 ... A0A0L7KHE6 30537832
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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