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BioLiP Library
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3801 1cjb:D (2.0) BS02 POP 2.4.2.22
    2.4.2.8    		 GO:0000166 ... P20035 10433693
    3802 1cjc:A (1.7) BS01 FAD 1.18.1.6 GO:0005515 ... P08165 10369776
    3803 1cjf:A (2.3) BS01 peptide ? GO:0000774 ... P07737 10404225
    3804 1cjf:B (2.3) BS01 peptide ? GO:0000774 ... P07737 10404225
    3805 1cjf:B (2.3) BS02 peptide ? GO:0000774 ... P07737 10404225
    3806 1cjy:A (2.5) BS01 CA 3.1.1.4
    3.1.1.5    		 GO:0000139 ... P47712 10319815
    3807 1cjy:A (2.5) BS02 CA 3.1.1.4
    3.1.1.5    		 GO:0000139 ... P47712 10319815
    3808 1cjy:B (2.5) BS01 CA 3.1.1.4
    3.1.1.5    		 GO:0000139 ... P47712 10319815
    3809 1cjy:B (2.5) BS02 CA 3.1.1.4
    3.1.1.5    		 GO:0000139 ... P47712 10319815
    3810 1ck1:A (2.6) BS01 ZN ? GO:0005576 ... Q06535 11934896
    3811 1ck6:A (1.9) BS01 BMA 1.11.1.7 GO:0000302 ... P28313 10504224
    3812 1ck6:A (1.9) BS02 CA 1.11.1.7 GO:0000302 ... P28313 10504224
    3813 1ck6:A (1.9) BS03 CA 1.11.1.7 GO:0000302 ... P28313 10504224
    3814 1ck6:A (1.9) BS04 SHA 1.11.1.7 GO:0000302 ... P28313 10504224
    3815 1ck6:A (1.9) BS05 HEM 1.11.1.7 GO:0000302 ... P28313 10504224
    3816 1ck7:A (2.8) BS01 ZN 3.4.24.24 GO:0001525 ... P08253 10356396
    3817 1ck7:A (2.8) BS02 ZN 3.4.24.24 GO:0001525 ... P08253 10356396
    3818 1ck7:A (2.8) BS03 CA 3.4.24.24 GO:0001525 ... P08253 10356396
    3819 1ck7:A (2.8) BS04 CA 3.4.24.24 GO:0001525 ... P08253 10356396
    3820 1ck7:A (2.8) BS05 CA 3.4.24.24 GO:0001525 ... P08253 10356396
    3821 1ckp:A (2.05) BS01 PVB 2.7.11.22 GO:0000082 ... P24941 9677190 BindingDB: IC50=6nM
    3822 1ckt:A (2.5) BS01 dna ? GO:0003677 ... P63159 10385126
    3823 1ckt:A (2.5) BS02 dna ? GO:0003677 ... P63159 10385126
    3824 1cku:A (1.2) BS01 SF4 ? GO:0009055 ... P00260 10531472
    3825 1cku:B (1.2) BS01 SF4 ? GO:0009055 ... P00260 10531472
    3826 1cl0:A (2.5) BS01 FAD 1.8.1.9 GO:0004791 ... P0A9P4 10595539
    3827 1cl1:A (1.83) BS01 BCT 4.4.1.13
    4.4.1.28    		 GO:0003824 ... P06721 8831789
    3828 1cl1:B (1.83) BS01 BCT 4.4.1.13
    4.4.1.28    		 GO:0003824 ... P06721 8831789
    3829 1cl2:A (2.2) BS01 PPG 4.4.1.13
    4.4.1.28    		 GO:0003824 ... P06721 9376370
    3830 1cl2:B (2.2) BS01 PPG 4.4.1.13
    4.4.1.28    		 GO:0003824 ... P06721 9376370
    3831 1cli:A (2.5) BS01 SO4 6.3.3.1 GO:0004637 ... P08178 10508786
    3832 1cli:B (2.5) BS01 SO4 6.3.3.1 GO:0004637 ... P08178 10508786
    3833 1cli:C (2.5) BS01 SO4 6.3.3.1 GO:0004637 ... P08178 10508786
    3834 1cli:D (2.5) BS01 SO4 6.3.3.1 GO:0004637 ... P08178 10508786
    3835 1clk:A (1.9) BS01 MG 5.3.1.5 GO:0000287 ... P50910 10666592
    3836 1clk:A (1.9) BS02 CO 5.3.1.5 GO:0000287 ... P50910 10666592
    3837 1cll:A (1.7) BS01 CA ? GO:0000086 ... P0DP23 1474585
    3838 1cll:A (1.7) BS02 CA ? GO:0000086 ... P0DP23 1474585
    3839 1cll:A (1.7) BS03 CA ? GO:0000086 ... P0DP23 1474585
    3840 1cll:A (1.7) BS04 CA ? GO:0000086 ... P0DP23 1474585
    3841 1cls:A (1.9) BS01 HEM ? GO:0004601 ... P69905 8639491
    3842 1cls:B (1.9) BS01 HEM ? GO:0004601 ... P68871 8639491
    3843 1cls:C (1.9) BS01 HEM ? GO:0004601 ... P69905 8639491
    3844 1cls:D (1.9) BS01 HEM ? GO:0004601 ... P68871 8639491
    3845 1cls:D (1.9) BS02 DEC ? GO:0004601 ... P68871 8639491
    3846 1clu:A (1.7) BS01 DBG 3.6.5.2 GO:0003924 ... P01112 10359839 MOAD: Kd=5.4nM
    PDBbind: -logKd/Ki=8.27, Kd=5.4nM
    3847 1clv:A (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P56634 10508777
    3848 1cm1:A (2.0) BS01 peptide ? GO:0000922 ... P62157 9438860
    3849 1cm1:A (2.0) BS02 CA ? GO:0000922 ... P62157 9438860
    3850 1cm1:A (2.0) BS03 CA ? GO:0000922 ... P62157 9438860
    3851 1cm1:A (2.0) BS04 CA ? GO:0000922 ... P62157 9438860
    3852 1cm1:A (2.0) BS05 CA ? GO:0000922 ... P62157 9438860
    3853 1cm1:A (2.0) BS06 CA ? GO:0000922 ... P62157 9438860
    3854 1cm4:A (2.0) BS01 peptide ? GO:0000922 ... P62157 9438860
    3855 1cm4:A (2.0) BS02 CA ? GO:0000922 ... P62157 9438860
    3856 1cm4:A (2.0) BS03 CA ? GO:0000922 ... P62157 9438860
    3857 1cm4:A (2.0) BS04 CA ? GO:0000922 ... P62157 9438860
    3858 1cm4:A (2.0) BS05 CA ? GO:0000922 ... P62157 9438860
    3859 1cm4:A (2.0) BS06 CA ? GO:0000922 ... P62157 9438860
    3860 1cm4:A (2.0) BS07 CA ? GO:0000922 ... P62157 9438860
    3861 1cm4:A (2.0) BS08 CA ? GO:0000922 ... P62157 9438860
    3862 1cm4:A (2.0) BS09 CA ? GO:0000922 ... P62157 9438860
    3863 1cm4:A (2.0) BS10 CA ? GO:0000922 ... P62157 9438860
    3864 1cm4:A (2.0) BS11 CA ? GO:0000922 ... P62157 9438860
    3865 1cm4:A (2.0) BS12 CA ? GO:0000922 ... P62157 9438860
    3866 1cm4:A (2.0) BS13 CA ? GO:0000922 ... P62157 9438860
    3867 1cm4:A (2.0) BS14 CA ? GO:0000922 ... P62157 9438860
    3868 1cm4:A (2.0) BS15 CA ? GO:0000922 ... P62157 9438860
    3869 1cm4:A (2.0) BS16 CA ? GO:0000922 ... P62157 9438860
    3870 1cm4:A (2.0) BS17 CA ? GO:0000922 ... P62157 9438860
    3871 1cm4:A (2.0) BS18 CA ? GO:0000922 ... P62157 9438860
    3872 1cm5:A (2.3) BS01 CO3 2.3.1.54 GO:0003824 ... P09373 10504733
    3873 1cm5:B (2.3) BS01 CO3 2.3.1.54 GO:0003824 ... P09373 10504733
    3874 1cm8:A (2.4) BS01 ANP 2.7.11.24 GO:0000165 ... P53778 10508788
    3875 1cm8:B (2.4) BS01 ANP 2.7.11.24 GO:0000165 ... P53778 10508788
    3876 1cma:A (2.8) BS01 dna ? GO:0003677 ... P0A8U6 1406951
    3877 1cma:A (2.8) BS02 SAM ? GO:0003677 ... P0A8U6 1406951
    3878 1cma:A (2.8) BS03 SAM ? GO:0003677 ... P0A8U6 1406951
    3879 1cma:B (2.8) BS01 dna ? GO:0003677 ... P0A8U6 1406951
    3880 1cma:B (2.8) BS02 SAM ? GO:0003677 ... P0A8U6 1406951
    3881 1cma:B (2.8) BS03 SAM ? GO:0003677 ... P0A8U6 1406951
    3882 1cmc:A (1.8) BS01 MG ? GO:0003677 ... P0A8U6 2677753
    3883 1cmc:A (1.8) BS02 SAM ? GO:0003677 ... P0A8U6 2677753
    3884 1cmc:A (1.8) BS03 SAM ? GO:0003677 ... P0A8U6 2677753
    3885 1cmc:B (1.8) BS01 SAM ? GO:0003677 ... P0A8U6 2677753
    3886 1cmc:B (1.8) BS02 MG ? GO:0003677 ... P0A8U6 2677753
    3887 1cmc:B (1.8) BS03 SAM ? GO:0003677 ... P0A8U6 2677753
    3888 1cmi:A (2.5) BS01 peptide ? GO:0000776 ... P63167 10426949
    3889 1cmi:B (2.5) BS01 peptide ? GO:0000776 ... P63167 10426949
    3890 1cmk:E (2.9) BS01 peptide 2.7.11.11 GO:0001669 ... P36887 8251932
    3891 1cmk:E (2.9) BS02 MYR 2.7.11.11 GO:0001669 ... P36887 8251932
    3892 1cmx:C (2.25) BS01 peptide 3.4.19.12 GO:0004843 ... P35127 10406793
    3893 1cmy:A (3.0) BS01 HEM ? GO:0004601 ... P69905 1896430
    3894 1cmy:B (3.0) BS01 HEM ? GO:0004601 ... P68871 1896430
    3895 1cmy:C (3.0) BS01 HEM ? GO:0004601 ... P69905 1896430
    3896 1cmy:D (3.0) BS01 HEM ? GO:0004601 ... P68871 1896430
    3897 1cn3:A (2.2) BS01 peptide ? GO:0005198 ... P49302 9628860
    3898 1cn3:B (2.2) BS01 peptide ? GO:0005198 ... P49302 9628860
    3899 1cn3:D (2.2) BS01 peptide ? GO:0005198 ... P49302 9628860
    3900 1cn3:E (2.2) BS01 peptide ? GO:0005198 ... P49302 9628860
    3901 1cnb:A (2.35) BS01 BME 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7803386
    3902 1cnc:A (2.2) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7803386
    3903 1cng:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    3904 1cnh:A (2.05) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    3905 1cni:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    3906 1cnj:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    3907 1cnk:A (2.15) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    3908 1cno:A (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    3909 1cno:B (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    3910 1cno:C (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    3911 1cno:D (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    3912 1cno:E (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    3913 1cno:F (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    3914 1cno:G (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    3915 1cno:G (2.2) BS02 HEC ? GO:0009055 ... P82903 10369779
    3916 1cno:H (2.2) BS01 HEC ? GO:0009055 ... P82903 10369779
    3917 1cnq:A (2.27) BS01 F6P 3.1.3.11 GO:0005737 ... P00636 9708979
    3918 1cnq:A (2.27) BS02 F6P 3.1.3.11 GO:0005737 ... P00636 9708979
    3919 1cnq:A (2.27) BS03 ZN 3.1.3.11 GO:0005737 ... P00636 9708979
    3920 1cnq:A (2.27) BS04 ZN 3.1.3.11 GO:0005737 ... P00636 9708979
    3921 1cnq:A (2.27) BS05 ZN 3.1.3.11 GO:0005737 ... P00636 9708979
    3922 1cnq:A (2.27) BS06 PO4 3.1.3.11 GO:0005737 ... P00636 9708979
    3923 1cnw:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7608893
    3924 1cnw:A (2.0) BS02 EG1 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7608893 MOAD: Kd=19nM
    PDBbind: -logKd/Ki=7.72, Kd=19nM
    3925 1cnx:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7608893
    3926 1cnx:A (1.9) BS02 EG2 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7608893 MOAD: Kd=43nM
    PDBbind: -logKd/Ki=7.37, Kd=43nM
    3927 1cny:A (2.3) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7608893
    3928 1cny:A (2.3) BS02 EG3 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7608893 MOAD: Kd=14nM
    PDBbind: -logKd/Ki=7.85, Kd=14nM
    3929 1cnz:A (1.76) BS01 MN 1.1.1.85 GO:0000287 ... P37412 9086278
    3930 1cnz:B (1.76) BS01 MN 1.1.1.85 GO:0000287 ... P37412 9086278
    3931 1co0:A (-1.00) BS01 dna ? GO:0003677 ... P0A881 N/A
    3932 1co0:A (-1.00) BS02 dna ? GO:0003677 ... P0A881 N/A
    3933 1co0:A (-1.00) BS03 TRP ? GO:0003677 ... P0A881 N/A
    3934 1co0:A (-1.00) BS04 TRP ? GO:0003677 ... P0A881 N/A
    3935 1co0:B (-1.00) BS01 dna ? GO:0003677 ... P0A881 N/A
    3936 1co0:B (-1.00) BS02 dna ? GO:0003677 ... P0A881 N/A
    3937 1co0:B (-1.00) BS03 TRP ? GO:0003677 ... P0A881 N/A
    3938 1co0:B (-1.00) BS04 TRP ? GO:0003677 ... P0A881 N/A
    3939 1co4:A (-1.00) BS01 ZN ? GO:0003677 ... P41772 9665167
    3940 1co8:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 11084036
    3941 1co9:A (1.6) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 11084036
    3942 1cob:A (2.0) BS01 CU 1.15.1.1 GO:0000209 ... P00442 1619651
    3943 1cob:A (2.0) BS02 CO 1.15.1.1 GO:0000209 ... P00442 1619651
    3944 1cob:B (2.0) BS01 CU 1.15.1.1 GO:0000209 ... P00442 1619651
    3945 1cob:B (2.0) BS02 CO 1.15.1.1 GO:0000209 ... P00442 1619651
    3946 1coh:A (2.9) BS01 HEM ? GO:0004601 ... P69905 2738915
    3947 1coh:B (2.9) BS01 COH ? GO:0004601 ... P68871 2738915
    3948 1coh:C (2.9) BS01 HEM ? GO:0004601 ... P69905 2738915
    3949 1coh:D (2.9) BS01 COH ? GO:0004601 ... P68871 2738915
    3950 1com:A (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    3951 1com:A (2.2) BS02 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    3952 1com:B (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    3953 1com:B (2.2) BS02 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    3954 1com:C (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    3955 1com:C (2.2) BS02 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    3956 1com:D (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    3957 1com:D (2.2) BS02 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    3958 1com:E (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    3959 1com:E (2.2) BS02 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    3960 1com:F (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    3961 1com:F (2.2) BS02 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    3962 1com:G (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    3963 1com:G (2.2) BS02 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    3964 1com:H (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    3965 1com:I (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    3966 1com:J (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    3967 1com:K (2.2) BS01 PRE 5.4.99.5 GO:0004106 ... P19080 8046752
    3968 1cor:A (-1.00) BS01 HEC ? GO:0005506 ... P00101 1327105
    3969 1cow:A (3.1) BS01 ANP 3.6.1.34 GO:0005515 ... P19483 8692918
    3970 1cow:B (3.1) BS01 MG 3.6.1.34 GO:0005515 ... P19483 8692918
    3971 1cow:B (3.1) BS02 ANP 3.6.1.34 GO:0005515 ... P19483 8692918
    3972 1cow:C (3.1) BS01 ANP 3.6.1.34 GO:0005515 ... P19483 8692918
    3973 1cow:C (3.1) BS02 ADP 3.6.1.34 GO:0005515 ... P19483 8692918
    3974 1cow:D (3.1) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 8692918
    3975 1cow:E (3.1) BS01 AUR 7.1.2.2 GO:0005515 ... P00829 8692918
    3976 1cow:F (3.1) BS01 ANP 7.1.2.2 GO:0005515 ... P00829 8692918
    3977 1cow:F (3.1) BS02 AUR 7.1.2.2 GO:0005515 ... P00829 8692918
    3978 1coy:A (1.8) BS01 AND 1.1.3.6
    5.3.3.1    		 GO:0004769 ... P22637 8218217
    3979 1coy:A (1.8) BS02 FAD 1.1.3.6
    5.3.3.1    		 GO:0004769 ... P22637 8218217
    3980 1coz:A (2.0) BS01 CTP 2.7.7.39 GO:0003824 ... P27623 10508782
    3981 1coz:B (2.0) BS01 CTP 2.7.7.39 GO:0003824 ... P27623 10508782
    3982 1cp0:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 11084036
    3983 1cp3:A (2.3) BS01 peptide 3.4.22.56 GO:0001554 ... P42574 9045680
    3984 1cp3:B (2.3) BS01 peptide 3.4.22.56 GO:0001554 ... P42574 9045680
    3985 1cp4:A (1.9) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 2261467
    3986 1cp5:A (2.1) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 11084036
    3987 1cph:B (1.9) BS01 peptide ? GO:0005179 ... P01317 1477273
    3988 1cph:B (1.9) BS02 DCE ? GO:0005179 ... P01317 1477273
    3989 1cpq:A (1.72) BS01 HEM ? GO:0005506 ... P00147 8676382
    3990 1cpr:A (2.1) BS01 ZN ? GO:0005506 ... P00147 15299853
    3991 1cpr:A (2.1) BS02 HEM ? GO:0005506 ... P00147 15299853
    3992 1cpt:A (2.3) BS01 HEM 1.14.-.- GO:0004497 ... P33006 8120894
    3993 1cpu:A (2.0) BS01 GLC 3.2.1.1 GO:0003824 ... P04746 10769135
    3994 1cpu:A (2.0) BS02 AGL 3.2.1.1 GO:0003824 ... P04746 10769135
    3995 1cpu:A (2.0) BS03 GLC 3.2.1.1 GO:0003824 ... P04746 10769135
    3996 1cpu:A (2.0) BS04 GLC 3.2.1.1 GO:0003824 ... P04746 10769135
    3997 1cpu:A (2.0) BS05 CA 3.2.1.1 GO:0003824 ... P04746 10769135
    3998 1cpu:A (2.0) BS06 HMC 3.2.1.1 GO:0003824 ... P04746 10769135
    3999 1cpw:A (2.2) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 11084036
    4000 1cq2:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 10725379
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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