Zhanglab forum

Thank you! Does 1 or 9 represent the highest degree of confidence in secondary structure?

Hello! I am using I-TASSER downloaded onto my computer and could not figure out how to specify the secondary structure of specific residues in my input sequence, as can be done under "Option III" here: https://zhanglab.dcmb.med.umich.edu/I-TASSER/. Is there a command for including a text file that ...

Hello! If I choose to generate, for example, 2 .pdb files instead of 1 .pdb file for my protein sequence with I-TASSER, how much longer should I expect for the modeling job to take? I am running I-TASSER on a local supercomputer with 14 CPUs. Thanks!

Hello! I am using I-TASSER downloaded onto my machine. I am only interested in the .pdb file output from I-TASSER. Is there an easier way to create .pdb from the seq.ss and exp.dat output files than running all of file2html.py? file2html.py gives me IndexError errors. Thanks!!