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BioLiP Library

PDB CCD ID: 8I8
Number of entries in BioLiP: 4
Chemical formula: C46 H82 N13 O30 P3 S
InChI: InChI=1S/C46H82N13O30P3S/c1-45(2,13-80-92(77,78)89-91(75,76)79-12-21-35(88-90(72,73)74)31(67)41(81-21)59-15-57-25-38(52)55-14-56-39(25)59)37(69)40(70)54-5-4-22(61)53-6-7-93-46(3,71)58-17-8-16(49)26(62)36(33(17)85-42-23(50)29(65)27(63)18(9-47)82-42)87-44-32(68)34(20(11-60)84-44)86-43-24(51)30(66)28(64)19(10-48)83-43/h9-10,14-18,20-24,26-37,41-44,47,53,58,60-69,71H,4-8,11-13,48-51H2,1-3H3,(H,54,70)(H,75,76)(H,77,78)(H2,52,55,56)(H2,72,73,74)/b19-10+,47-9+/t16-,17+,18-,20-,21-,22+,23-,24-,26+,27-,28-,29-,30-,31-,32-,33-,34-,35-,36-,37+,41-,42-,43-,44+,46+/m1/s1
InChIKey: KNUGXPWVQDBKDV-VYRIPBRXSA-N
SMILES:
SoftwareSMILES
OpenEye OEToolkits 2.0.7[H]/N=C/C1[C@H]([C@@H]([C@H]([C@H](O1)O[C@@H]2[C@H](C[C@H]([C@@H]([C@H]2OC3C([C@@H]([C@H](O3)CO)O[C@@H]4[C@@H]([C@H]([C@@H](/C(=C\N)/O4)O)O)N)O)O)N)N[C@@](C)(O)SCCN[C@H](CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)OP(=O)(O)OC[C@@H]5[C@H](C(C(O5)n6cnc7c6ncnc7N)O)OP(=O)(O)O)O)O)N)O)O
CACTVS 3.385CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[CH](O)C(=O)NCC[CH](O)NCCS[C](C)(O)N[CH]4C[CH](N)[CH](O)[CH](O[CH]5O[CH](CO)[CH](O[CH]6OC(=CN)[CH](O)[CH](O)[CH]6N)[CH]5O)[CH]4O[CH]7O[CH](C=N)[CH](O)[CH](O)[CH]7N
OpenEye OEToolkits 2.0.7CC(C)(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)C(C(=O)NCCC(NCCSC(C)(NC4CC(C(C(C4OC5C(C(C(C(O5)C=N)O)O)N)OC6C(C(C(O6)CO)OC7C(C(C(C(=CN)O7)O)O)N)O)O)N)O)O)O
CACTVS 3.385CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[C@@H](O)C(=O)NCC[C@H](O)NCCS[C@](C)(O)N[C@H]4C[C@@H](N)[C@H](O)[C@@H](O[C@@H]5O[C@H](CO)[C@@H](O[C@H]6OC(=C/N)/[C@@H](O)[C@H](O)[C@H]6N)[C@H]5O)[C@@H]4O[C@H]7O[C@H](C=N)[C@@H](O)[C@H](O)[C@H]7N
Name:[[(2~{R},3~{S})-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(3~{R})-4-[[(3~{S})-3-[2-[(1~{S})-1-[[(1~{S},2~{R},3~{R},4~{S},5~{R})-5-azanyl-3-[(4~{S},5~{R})-4-[(2~{S},3~{R},4~{R},5~{S},6~{E})-3-azanyl-6-(azanylmethylidene)-4,5-bis(oxidanyl)oxan-2-yl]oxy-5-(hydroxymethyl)-3-oxidanyl-oxolan-2-yl]oxy-2-[(2~{S},3~{R},4~{R},5~{S})-3-azanyl-6-(iminomethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-4-oxidanyl-cyclohexyl]amino]-1-oxidanyl-ethyl]sulfanylethylamino]-3-oxidanyl-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] hydrogen phosphate

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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