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BioLiP Library
>protein
TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGYEVE

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4a46:A 63 63 0.9841 0.9841 0.9841 3.67e-38 4a46:B, 4a46:C, 4a46:D, 4a47:A, 4a47:B, 4a47:C, 4a47:D, 2xmj:A, 2xmj:B, 2xmk:A, 2xmk:B, 2xmm:A, 2xmm:B, 2xmt:A, 2xmt:B, 2xmu:A, 2xmu:B, 2xmv:A, 2xmv:B, 2xmv:C, 2xmv:D, 2xmv:E, 2xmv:F
2 4y2i:A 65 59 0.3016 0.2923 0.3220 2.42e-06
3 1afj:A 72 63 0.3016 0.2639 0.3016 0.049
4 3i57:A 184 25 0.2222 0.0761 0.5600 0.20 3i57:B
5 6c2h:A 345 55 0.2540 0.0464 0.2909 0.68 6c2q:A, 6c2z:A, 6c4p:A
6 7yeh:A 1020 59 0.2698 0.0167 0.2881 2.2 4ay5:A, 4ay5:B, 4ay5:C, 4ay5:D, 4ay6:A, 4ay6:B, 4ay6:C, 4ay6:D, 5c1d:A, 4cdr:A, 4cdr:B, 4cdr:C, 4cdr:D, 8cm9:A, 8cm9:B, 8cm9:D, 8cm9:C, 8fe7:A, 8fe7:C, 8fe7:E, 8fe7:G, 8fuf:A, 8fuf:C, 8fuf:E, 8fuf:G, 4gyw:C, 4gz3:C, 4gz5:A, 4gz5:B, 4gz5:C, 4gz5:D, 4gz6:A, 4gz6:B, 4gz6:C, 4gz6:D, 5hgv:C, 6ibo:A, 5lvv:A, 6ma1:A, 6ma2:A, 6ma3:A, 6ma4:A, 6ma5:A, 4n39:A, 4n3a:A, 4n3b:A, 4n3c:A, 5npr:A, 3pe3:A, 3pe3:B, 3pe3:C, 3pe3:D, 3pe4:A, 3pe4:C, 6q4m:A, 3tax:A, 3tax:C, 1w3b:A, 4xi9:A, 4xi9:B, 4xi9:C, 4xi9:D, 4xif:A, 4xif:B, 4xif:C, 4xif:D
7 7xrm:B 253 66 0.2857 0.0711 0.2727 2.5 3abo:B, 3abo:D, 3abq:B, 3abq:D, 3abr:B, 3abr:D, 3abs:B, 3abs:D, 3any:B, 3any:D, 3ao0:B, 3ao0:D, 7xrm:D, 7xrn:B, 7xrn:D, 5ysn:B, 5ysn:D, 5ysr:B, 5ysr:D
8 6b6w:B 628 50 0.2381 0.0239 0.3000 4.8 6b6v:A, 6b6v:B, 6b6w:A, 6b6x:A, 6b6x:B, 6b6y:A, 6b6y:B, 6dc2:A, 6dc2:B, 6dc2:C, 6dc2:D, 6onc:A, 6onc:B, 6onc:C, 6onc:D, 6ond:A, 6ond:B, 6ond:C, 6ond:D, 6ons:A, 7tsj:A, 6vwy:A, 6vwy:B, 6vwz:A, 6vwz:B, 6vx0:A, 6vx0:B, 6vx1:A, 6vx1:B
9 1mwz:A 73 61 0.2698 0.2329 0.2787 5.7
10 4v8m:Bf 413 22 0.1746 0.0266 0.5000 7.8 8ova:Bf, 8ove:Bf, 5t5h:f

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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