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BioLiP Library
>protein
RGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1ahd:P 68 58 1.0000 0.8529 1.0000 5.12e-37
2 2r5z:A 75 58 0.9310 0.7200 0.9310 2.17e-33 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
3 4uus:A 67 56 0.8966 0.7761 0.9286 8.16e-32 4uus:E
4 4cyc:A 66 56 0.8621 0.7576 0.8929 8.36e-30 1b8i:A
5 2h1k:B 60 57 0.7069 0.6833 0.7193 1.19e-23 2h1k:A
6 1puf:A 77 58 0.7069 0.5325 0.7069 2.68e-22 2lp0:A
7 5zjr:A 64 56 0.6034 0.5469 0.6250 1.53e-19 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
8 1b72:A 68 54 0.6207 0.5294 0.6667 3.16e-19
9 6es3:K 72 56 0.6034 0.4861 0.6250 7.15e-19 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
10 2me6:A 71 56 0.5862 0.4789 0.6071 2.23e-18
11 8eml:A 58 58 0.6207 0.6207 0.6207 2.45e-18 8eml:B
12 3a01:A 78 58 0.4483 0.3333 0.4483 6.99e-14 3a01:E
13 1jgg:A 57 57 0.5172 0.5263 0.5263 2.18e-13 1jgg:B
14 5eea:G 63 54 0.4828 0.4444 0.5185 3.00e-13 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
15 8pna:A 67 57 0.3966 0.3433 0.4035 1.92e-12 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
16 2ld5:A 67 54 0.4483 0.3881 0.4815 3.51e-12
17 1ig7:A 58 56 0.4655 0.4655 0.4821 7.55e-12
18 6m3d:C 108 56 0.4655 0.2500 0.4821 5.31e-11 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
19 6m3d:C 108 48 0.3966 0.2130 0.4792 2.76e-09 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
20 4rdu:D 62 56 0.4138 0.3871 0.4286 7.09e-11 4rdu:A, 4xrs:I, 4xrs:G
21 3a01:F 61 57 0.4655 0.4426 0.4737 1.31e-10 3a01:B, 3lnq:A
22 8osb:E 62 56 0.4483 0.4194 0.4643 4.37e-10
23 3rkq:A 58 55 0.4310 0.4310 0.4545 5.73e-10 3rkq:B
24 1zq3:P 68 55 0.4310 0.3676 0.4545 2.19e-09
25 2lkx:A 68 56 0.4483 0.3824 0.4643 4.42e-09
26 4qtr:C 57 55 0.4310 0.4386 0.4545 4.59e-09 4qtr:A, 4qtr:B, 4qtr:D
27 5flv:M 229 53 0.4138 0.1048 0.4528 8.25e-09 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
28 1nk2:P 77 51 0.4138 0.3117 0.4706 1.19e-08 1nk3:P
29 3cmy:A 60 57 0.3966 0.3833 0.4035 9.74e-08
30 1fjl:A 65 58 0.3966 0.3538 0.3966 3.17e-07 1fjl:B, 1fjl:C
31 4rbo:A 55 52 0.3103 0.3273 0.3462 5.06e-06 4rbo:D
32 9b8u:B 66 49 0.3276 0.2879 0.3878 9.50e-05 9b8u:A, 9b8u:C, 9b8u:D
33 6e8c:A 135 53 0.3621 0.1556 0.3962 2.45e-04 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
34 6e8c:A 135 49 0.2759 0.1185 0.3265 0.005 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
35 8ejo:A 56 53 0.3103 0.3214 0.3396 0.001 8ejo:B, 8ejp:A, 8ejp:B
36 4egc:A 539 40 0.2586 0.0278 0.3750 0.003
37 1le8:A 53 42 0.2414 0.2642 0.3333 0.003 1akh:A, 1yrn:A
38 8ik5:C 67 56 0.3103 0.2687 0.3214 0.006 8ike:C, 8ilw:C
39 5hod:A 61 56 0.3103 0.2951 0.3214 0.015 5hod:D
40 1gt0:C 137 45 0.2931 0.1241 0.3778 0.019 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
41 1lfu:P 82 51 0.2586 0.1829 0.2941 0.023 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
42 3l1p:A 147 25 0.1897 0.0748 0.4400 0.54 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
43 8bx1:A 127 24 0.1897 0.0866 0.4583 0.66
44 8asd:A 1826 40 0.2586 0.0082 0.3750 0.77
45 8g8e:X 140 25 0.1897 0.0786 0.4400 0.77 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
46 7alp:U 1935 40 0.2586 0.0078 0.3750 0.78
47 8r6y:A 1991 40 0.2586 0.0075 0.3750 0.78 8as7:A, 8r6w:A, 6xya:B
48 8asb:A 1715 40 0.2586 0.0087 0.3750 0.78 8as6:A, 8asg:A, 8r6u:A
49 3d1n:I 150 53 0.2586 0.1000 0.2830 1.4 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
50 3f98:A 377 37 0.2241 0.0345 0.3514 1.5 3f97:A, 3f97:B, 3f98:B, 3f98:C, 3f9c:A, 3f9c:B, 5i8p:A, 5i8p:B, 5i9i:A, 5i9i:B, 5jad:A, 5jah:A, 5jal:A, 5jan:A, 5jao:A, 5jap:A, 5jar:A, 5jas:A, 5jat:A, 5jau:A, 5lp1:A, 5lyy:A, 5lz2:A, 5lz4:A, 5lz5:A, 5lz7:A, 5lz8:A, 5lz9:A, 6m06:A, 6m06:B, 6m07:A, 6m07:B, 6m08:B, 5ye7:B, 5ye7:A, 5ye8:B, 5ye8:A, 5ye9:A, 5ye9:B, 5yea:A, 5yea:B
51 7xrc:C 134 25 0.1724 0.0746 0.4000 2.2 2xsd:C
52 6b2q:B 267 35 0.2069 0.0449 0.3429 7.5 6b2q:A, 6b2q:C, 6b2q:D
53 6zk7:AAAA 425 19 0.1379 0.0188 0.4211 7.8
54 5wc9:A 136 43 0.2069 0.0882 0.2791 8.3 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
55 7c7l:B 372 40 0.2241 0.0349 0.3250 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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