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BioLiP Library
>protein
RDVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1je8:E 67 66 1.0000 0.9851 1.0000 2.30e-43 1je8:A, 1je8:B, 1je8:F, 8u3b:G, 8u3b:H, 1zg1:A, 1zg1:B, 1zg1:E, 1zg1:F, 1zg5:A, 1zg5:B, 1zg5:E, 1zg5:F
2 4wu4:B 68 57 0.4242 0.4118 0.4912 5.22e-12 4wu4:A, 4wuh:B, 4wuh:A, 4wul:A, 4wul:B
3 1zlk:A 65 60 0.3636 0.3692 0.4000 5.64e-11 1zlk:B
4 3klo:A 217 56 0.3485 0.1060 0.4107 1.20e-09 3klo:B, 3klo:C
5 5hev:F 210 55 0.3788 0.1190 0.4545 1.65e-09 5hev:A, 5hev:B, 5hev:C
6 4if4:A 208 57 0.3788 0.1202 0.4386 3.88e-09 4if4:B, 4if4:C, 4if4:D, 7ve5:B, 7ve5:A, 7ve6:A, 7ve6:B
7 4yn8:A 201 61 0.3485 0.1144 0.3770 9.17e-09
8 4ldz:A 196 55 0.3333 0.1122 0.4000 1.58e-08 5iuk:C, 5iul:C, 5iul:F, 4ldz:B, 4le0:A, 4le0:B, 7ssj:B, 7ssj:E, 7ssj:F
9 5xt2:B 204 53 0.3182 0.1029 0.3962 2.16e-07 5xt2:A, 5xt2:C, 5xt2:D, 5xt2:E
10 8a5r:AAA 206 50 0.3030 0.0971 0.4000 3.63e-07 8a5s:AAA, 3p7n:A, 3p7n:B
11 1yio:A 198 49 0.3333 0.1111 0.4490 5.54e-07 1zn2:A
12 4zmr:A 207 54 0.3333 0.1063 0.4074 9.07e-07 4e7o:A, 4e7o:B, 4e7p:A, 4e7p:B, 4zmr:B, 4zms:A, 4zms:B
13 3qp5:A 251 53 0.3333 0.0876 0.4151 5.15e-06 3qp1:A, 3qp2:A, 3qp4:A, 3qp5:B, 3qp5:C, 3qp5:D
14 3qp6:A 258 53 0.3182 0.0814 0.3962 1.57e-05 3qp8:A, 3qp8:B, 3qp8:C, 3qp8:D
15 7r3g:B 236 50 0.3030 0.0847 0.4000 2.10e-05 7r3g:A, 7r3h:B, 7r3h:A, 7r3i:A, 7r3i:B
16 4y13:A 244 54 0.2879 0.0779 0.3519 1.22e-04 2avx:A, 4y15:A, 4y15:B, 4y15:C, 4y17:A, 4y17:B, 4y17:C
17 7r3e:A 545 42 0.3030 0.0367 0.4762 0.002 8b4a:A, 8b4a:B, 8b4a:C, 8b4a:D, 3dh8:A, 8dq0:C, 8dq0:D, 8dq1:C, 8dq1:D, 5hio:A, 5hip:A, 5hiq:A, 5his:A, 7kgw:A, 7kgx:A, 2q0i:A, 2q0j:A, 2q0j:B, 7r3e:B, 7r3f:A, 7r3j:A, 7r3j:B, 7r3j:C, 7r3j:D, 7tz9:A, 7tza:A, 7u6g:A, 2vw8:A
18 5o8z:B 209 50 0.1970 0.0622 0.2600 0.23 5o8z:A, 5vxn:A, 5vxn:B, 5vxn:C, 5vxn:D, 5w43:A, 5w43:B, 6zii:B, 6zii:A, 6zix:B, 6zix:A, 6zj2:D, 6zj2:C, 6zj2:B, 6zj2:A
19 8cvc:A 327 72 0.2879 0.0581 0.2639 2.2 8cv8:A, 8cv9:A, 8cva:A, 8cvb:A, 8cvd:A, 8cve:A, 8cvf:A, 8cvg:A, 8cvh:A
20 7fby:A 153 45 0.2121 0.0915 0.3111 2.9
21 4m6f:A 188 38 0.1970 0.0691 0.3421 4.0
22 8q0f:W 116 47 0.2121 0.1207 0.2979 4.1 7ak5:W, 7ak6:W, 7b93:W, 8c2s:W, 8ca3:W, 8ca5:W, 6g2j:W, 6g72:W, 5gup:Q, 8iao:W, 8iap:W, 8ib4:W, 8ib5:W, 8ib9:W, 8iba:W, 8ibd:W, 8ibe:W, 8ic2:W, 8ic3:W, 5lnk:g, 8olt:W, 8om1:W, 7psa:W, 8pw5:W1, 8pw6:W1, 8pw7:W1, 8q0a:W, 8q0j:W, 8q0m:W, 8q0o:W, 8q0q:W, 8q1p:W, 8q1u:W, 8q1y:W, 8q25:W, 8q45:W, 8q46:W, 8q47:W, 8q48:W, 8q49:W, 8q4a:W, 6q9d:A6, 6qa9:A6, 6qbx:A6, 6qc2:A6, 6qc3:A6, 6qc4:A6, 6qc5:A6, 6qc6:A6, 6qc7:A6, 6qc8:A6, 6qc9:A6, 6qca:A6, 6qcf:A6, 7qsd:W, 7qsk:W, 7qsl:W, 7qsm:W, 7qsn:W, 7qso:W, 7r41:W, 7r42:W, 7r43:W, 7r44:W, 7r45:W, 7r46:W, 7r47:W, 7r48:W, 7r4c:W, 7r4d:W, 7r4f:W, 7r4g:W, 8rgp:W, 8rgq:W, 8rgr:W, 8rgt:W, 8ud1:1W, 8ueo:1W, 8uep:1W, 8ueq:1W, 8uer:1W, 8ues:1W, 8uet:1W, 8ueu:1W, 8uev:1W, 8uew:1W, 8uex:1W, 8uey:1W, 8uez:1W, 8ugh:1W, 8ugi:1W, 8ugj:1W, 8ugn:1W, 8ugn:5W, 8ugr:1W, 8ugr:5W, 7v2c:E, 7v2d:E, 7v2e:E, 7v2f:E, 7v2h:E, 7v2k:E, 7v2r:E, 7v30:E, 7v31:E, 7v32:E, 7v33:E, 7v3m:E, 7vb7:E, 7vbn:E, 7vbz:E, 7vwj:E, 7vxp:E, 7vxu:E, 7vy8:E, 7vya:E, 7vyf:E, 7vyh:E, 7vyn:E, 7vz1:E, 7vzv:E, 7vzw:E, 7w00:E, 7w0h:E, 7w0r:E, 7w0y:E, 7w1o:E, 7w1p:E, 7w1t:E, 7w1u:E, 7w1v:E, 7w1z:E, 7w20:E, 7w2k:E, 7w2l:E, 7w2r:E, 7w2u:E, 7w2y:E, 7w31:E, 7w32:E, 7w35:E, 7w4c:E, 7w4d:E, 7w4e:E, 7w4f:E, 7w4g:E, 7w4j:E, 7w4k:E, 7w4l:E, 7w4m:E, 7w4n:E, 7w4q:E, 5xtb:E, 5xtd:E, 5xth:E, 5xti:E, 5xti:BE, 7zd6:g, 7zdh:g, 7zdj:g, 7zdm:g, 7zdp:g, 7zeb:g, 6zk9:g, 6zkc:g, 6zkd:g, 6zke:g, 6zkf:g, 6zkg:g, 6zkh:g, 6zki:g, 6zkj:g, 6zkk:g, 6zkl:g, 6zkm:g, 6zkn:g, 6zko:g, 6zkp:g, 6zkq:g, 6zkr:g, 6zks:g, 6zkt:g, 6zku:g, 6zkv:g, 6zr2:W, 6ztq:W
23 6zu5:LF0 247 26 0.1667 0.0445 0.4231 4.6
24 4un1:B 159 39 0.1515 0.0629 0.2564 5.0 4un1:D
25 1onk:B 263 24 0.1667 0.0418 0.4583 5.8 3d7w:B, 1oql:B, 1pum:B, 1puu:B, 2r9k:B, 2rg9:B, 1sz6:B, 1tfm:B, 1yf8:B
26 6g76:A 291 58 0.2424 0.0550 0.2759 7.3 6g77:A, 6g77:B, 6g78:A, 6g78:B
27 3klo:D 173 26 0.1212 0.0462 0.3077 8.1
28 4ln1:B 321 26 0.1667 0.0343 0.4231 8.8 4ln1:A, 4ln1:C, 4ln1:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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