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BioLiP Library
>protein
RCRHRRRQAERLSQIKRLLSEKKTCQCPHRFQKTCSPI

The query sequence (length=38) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1q68:A 38 38 1.0000 1.0000 1.0000 4.53e-21
2 2w2i:C 314 27 0.2632 0.0318 0.3704 0.17 2w2i:A, 2w2i:B
3 3zq6:D 307 28 0.3158 0.0391 0.4286 0.82 3zq6:A
4 3zq6:B 288 28 0.3158 0.0417 0.4286 0.93 3zq6:C
5 2yv9:A 285 21 0.2895 0.0386 0.5238 4.0 2yv9:B
6 2z5x:A 513 20 0.1842 0.0136 0.3500 5.6 2bxr:A, 2bxr:B, 2bxs:A, 2bxs:B, 2z5y:A
7 7cte:D 406 20 0.2632 0.0246 0.5000 6.6 7ctf:D, 7ctg:D, 7jpo:D, 7jpp:D, 7jpq:D, 7jpr:D, 7jps:D, 5uj7:C, 5uj7:D, 5ujm:D
8 8phe:A 551 26 0.1842 0.0127 0.2692 7.1 8phe:B, 8phf:A, 8phf:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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