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BioLiP Library
>protein
NEWTLELLEELKSEAVRHFPRIWLHNLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCSH

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6xqj:A 173 63 0.9841 0.3584 0.9841 5.06e-42 6xqi:C, 6xqi:B, 6xqi:A, 6xqi:D
2 6zx9:C 257 62 0.3492 0.0856 0.3548 0.010
3 4mlp:C 492 55 0.2381 0.0305 0.2727 0.039 7ej9:A, 7ej9:B, 4i6g:A, 4i6g:B, 6kx8:A, 6kx8:B, 4mlp:A, 4mlp:B, 4mlp:D, 4u8h:A, 4u8h:C, 7v8y:A, 7v8z:A
4 4cc9:B 98 65 0.2381 0.1531 0.2308 0.19
5 3cvv:A 519 35 0.2063 0.0250 0.3714 0.32 7ayv:A, 7azt:A, 8c1u:A, 8c69:A, 8c6a:A, 8c6b:A, 8c6c:A, 8c6f:A, 8c6h:A, 3cvu:A, 3cvw:A, 3cvx:A, 3cvy:A, 7qut:A, 2wb2:A, 2wq6:A, 2wq7:A
6 7dqx:D 770 40 0.2381 0.0195 0.3750 2.9 7dqx:A
7 6z9l:A 744 56 0.2698 0.0228 0.3036 3.8 6z9k:A, 6z9k:B
8 8zyo:A 210 14 0.1429 0.0429 0.6429 4.8 8zyo:B, 8zyo:D, 8zyp:A, 8zyp:C, 8zyp:D, 8zyq:B, 8zyq:C, 8zyq:D
9 2x3l:B 423 46 0.2222 0.0331 0.3043 4.9 2x3l:A
10 8zyq:A 166 14 0.1429 0.0542 0.6429 5.6
11 3be7:A 398 58 0.2540 0.0402 0.2759 8.0 3be7:E, 3be7:B, 3be7:D, 3be7:C, 3be7:F, 3be7:G, 3be7:H, 3dug:A, 3dug:B, 3dug:C, 3dug:D, 3dug:E, 3dug:F, 3dug:G, 3dug:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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