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BioLiP Library
>protein
MYEGNNMRSMMGTSYEDSRLNKRTELNENMSIDTNKSEDSYGVQIHSLSKQSFTG

The query sequence (length=55) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6iat:F 55 55 1.0000 1.0000 1.0000 3.82e-35 6iaw:S, 6iaw:I, 6iaw:Q, 6iaw:D, 6ib1:F, 6q3g:F1, 6q3g:N1, 6q3g:U1, 6q3g:c1, 6q3g:k1, 6q3g:F3, 6q3g:N3, 6q3g:V3, 6q3g:EK, 6q3g:ED, 6q3g:F4, 6q3g:N4, 6q3g:U4, 6q3g:c4, 6q3g:j4, 6q3g:F6, 6q3g:N6, 6q3g:V6, 6q3g:d6, 6q3g:l6, 6q3g:F7, 6q3g:N7, 6q3g:V7, 6q3g:d7, 6q3g:l7, 6q3g:F8, 6q3g:N8, 6q3g:V8, 6q3g:d8, 6q3g:l8, 6q3g:ND, 6q3g:FD, 6q3g:MD, 6q3g:GD, 6q3g:EP, 6q3g:HE, 6q3g:PE, 6q3g:XE, 6q3g:fE, 6q3g:FG, 6q3g:NG, 6q3g:VG, 6q3g:dG, 6q3g:lG, 6q3g:NJ, 6q3g:FJ, 6q3g:MJ, 6q3g:GJ, 6q3g:NK, 6q3g:FK, 6q3g:MK, 6q3g:GK, 6q3g:FL, 6q3g:NL, 6q3g:VL, 6q3g:dL, 6q3g:EJ, 6q3g:MP, 6q3g:NP, 6q3g:FP, 6q3g:GP, 6q3g:FQ, 6q3g:NQ, 6q3g:VQ, 6q3g:DS, 6q3g:gQ, 6q3g:FR, 6q3g:NR, 6q3g:VR, 6q3g:dR, 6q3g:kR, 6q3g:MS, 6q3g:ES, 6q3g:LS, 6q3g:FS
2 7pkt:j 120 27 0.1636 0.0750 0.3333 3.0
3 2uxq:A 402 35 0.1818 0.0249 0.2857 5.7 4aov:A, 2uxr:B
4 1vlj:B 400 25 0.1818 0.0250 0.4000 6.6 1vlj:A
5 1i7q:A 517 23 0.1455 0.0155 0.3478 9.0 1i7q:C, 1i7s:A, 1i7s:C
6 6kme:A 284 22 0.1818 0.0352 0.4545 9.0 6kmd:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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