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BioLiP Library
>protein
MKQRITVTVDSDSYQLLKAYDVNISGLVSTTMQNEARRLRAERWKVENQEGMVEVARFIEMNGSFADENKDW

The query sequence (length=72) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2h3a:A 72 72 1.0000 1.0000 1.0000 4.28e-49 2h3a:B, 2h3c:A, 2h3c:B
2 5xxu:R 117 23 0.1389 0.0855 0.4348 0.18
3 6n9a:D 330 24 0.1389 0.0303 0.4167 1.5 6nak:B, 6nak:G, 6s84:A, 6s84:D
4 2nxf:A 314 71 0.2361 0.0541 0.2394 3.0
5 7ums:1 499 34 0.1389 0.0200 0.2941 3.7 7ums:3
6 2dlc:X 339 34 0.1806 0.0383 0.3824 4.5
7 7ly7:A 908 27 0.1389 0.0110 0.3704 4.7
8 2e6l:A 186 45 0.1806 0.0699 0.2889 7.6
9 2p0r:A 319 59 0.1944 0.0439 0.2373 8.6 2p0r:B, 1ziv:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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