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BioLiP Library
>protein
MKKVEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGREFLQKLKVEIVVEDNQVDMVVDKIIAAARTGEIGDGKIFISP
VEQVIRIRTGEKN

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8wm7:G 94 94 1.0000 0.9894 0.9894 9.81e-59
2 3n5b:A 112 108 1.0000 0.8304 0.8611 9.76e-57 8wm7:E
3 4c3k:D 101 94 0.9032 0.8317 0.8936 1.31e-54 4c3k:A, 4c3k:E, 8wm7:F, 2xzw:E
4 2xbp:A 113 108 0.8925 0.7345 0.7685 1.98e-51 4aff:A, 4c3k:C, 4c3k:F, 2xul:A, 2xul:B, 2xul:C, 2xul:D, 2xul:E, 2xul:F, 2xzw:A, 2xzw:B, 2xzw:C, 2xzw:D, 2xzw:F, 2xzw:G, 2xzw:H, 2xzw:I
5 1ul3:B 94 93 0.8495 0.8404 0.8495 2.31e-50 1ul3:C
6 3lf0:A 99 93 0.5591 0.5253 0.5591 6.80e-38
7 2eg2:A 95 93 0.6559 0.6421 0.6559 7.60e-35
8 3lf0:B 112 107 0.5591 0.4643 0.4860 6.89e-34 3lf0:C
9 5l9n:A 92 93 0.6237 0.6304 0.6237 1.71e-33
10 4cnz:A 100 96 0.6237 0.5800 0.6042 4.39e-33 4cny:A, 4cnz:B, 4cnz:D, 4co4:A, 4co4:C, 4co4:B, 3o5t:B, 5ovo:B
11 4cnz:E 112 108 0.6237 0.5179 0.5370 2.89e-31 4cnz:C, 4cnz:F, 4co0:A, 4co0:B, 4co1:A, 4co1:B, 4co2:A, 4co2:B, 4co3:A, 4co3:B, 3mhy:A, 3mhy:C, 3mhy:B
12 2o66:B 108 91 0.5699 0.4907 0.5824 2.41e-30 2o66:A, 2o66:C, 2o67:A, 2o67:B, 2o67:C
13 7p4v:A 113 107 0.6237 0.5133 0.5421 2.29e-29
14 2gnk:A 95 93 0.5376 0.5263 0.5376 3.89e-29
15 2j9d:B 103 94 0.6022 0.5437 0.5957 8.61e-29 2j9d:H, 2j9d:K
16 2rd5:D 126 107 0.5806 0.4286 0.5047 9.95e-29 2rd5:C
17 3ta0:C 99 94 0.5699 0.5354 0.5638 1.23e-28 3ta0:A, 3ta0:B, 3ta0:D, 3ta0:E, 3ta0:F
18 2ns1:B 113 108 0.5484 0.4513 0.4722 3.41e-28 2nuu:G, 2nuu:H, 2nuu:I, 2nuu:J, 2nuu:K, 2nuu:L
19 2j9e:B 119 107 0.6237 0.4874 0.5421 1.99e-27 2j9c:A, 2j9c:C, 2j9c:B, 2j9d:C, 2j9d:E, 2j9d:F, 2j9d:I, 2j9d:J, 2j9d:L, 2j9e:A, 2j9e:C, 7p52:A
20 7p50:A 121 107 0.5914 0.4545 0.5140 1.00e-26 7p50:B, 7p50:C
21 3ta1:D 115 108 0.5699 0.4609 0.4907 2.61e-26 3ta1:A, 3ta1:C, 3ta1:B, 3ta1:E, 3ta1:F, 3ta2:A, 3ta2:B, 3ta2:C
22 6yc7:F 94 92 0.4409 0.4362 0.4457 2.78e-26
23 6yc7:A 105 100 0.4409 0.3905 0.4100 2.29e-25 6yc7:B, 6yc7:E, 6yc7:C
24 1v3s:A 97 95 0.5269 0.5052 0.5158 2.45e-24 1v3s:B, 1v3s:C, 1v9o:A, 1v9o:B, 1v9o:C
25 3ncr:C 116 108 0.5591 0.4483 0.4815 5.11e-24 3ncq:A, 3ncq:B, 3ncq:C, 3ncr:A, 3ncr:B
26 4ozl:A 104 91 0.5269 0.4712 0.5385 1.63e-20 4ozn:B
27 7o4x:A 103 95 0.4516 0.4078 0.4421 2.59e-19
28 4usj:C 142 105 0.5054 0.3310 0.4476 1.37e-18 4usi:A, 4usi:C, 4usi:B, 4usj:D
29 4ozn:A 116 103 0.5269 0.4224 0.4757 7.43e-17 4ozj:A, 4ozn:C
30 4rx6:B 115 107 0.3978 0.3217 0.3458 1.10e-12 4r25:A, 4rx6:A, 4rx6:D
31 3mcx:A 459 67 0.1505 0.0305 0.2090 1.3
32 3lvt:A 833 48 0.1613 0.0180 0.3125 1.3
33 8tyx:B 162 76 0.1613 0.0926 0.1974 1.3 8tyy:B
34 4yd9:A 1656 54 0.1720 0.0097 0.2963 3.7 4yd9:D, 4yd9:G, 4yd9:J, 4yd9:M, 4yd9:P, 4yd9:S, 4yd9:V, 4yd9:Y, 4yd9:b
35 7o9q:B 308 12 0.0968 0.0292 0.7500 5.3 7o9q:A
36 8wm6:k 180 33 0.1398 0.0722 0.3939 7.0 8wmj:k, 8wmv:k, 8wmw:k
37 5fmf:M 116 44 0.1398 0.1121 0.2955 8.2 8cen:U, 8ceo:U, 7ml1:U, 7ml4:U, 1nh2:C, 7o4i:U, 7o4j:U, 7o72:U, 7o73:U, 7o75:U, 7oha:L, 5sva:d, 1ytf:C, 7zs9:U, 7zsa:U, 7zsb:U
38 8rd8:C1 49 25 0.1290 0.2449 0.4800 9.2 8rdv:C1, 8rdw:C1
39 8w4g:A 876 52 0.1505 0.0160 0.2692 9.5 8w4i:A, 8w4n:A, 8x8g:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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