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BioLiP Library
>protein
MEIDEGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSPKNQFKSIKKVIAGFAENQKYG

The query sequence (length=70) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1dx8:A 70 70 1.0000 1.0000 1.0000 2.21e-47 1h7v:A
2 7e0l:A 491 51 0.3571 0.0509 0.4902 1.52e-14 7e0l:B, 7e0l:K, 7e0l:M, 7wsx:A, 7wsx:B
3 6gps:A 330 52 0.3571 0.0758 0.4808 2.39e-14 6gpx:A
4 5vbl:B 353 52 0.3571 0.0708 0.4808 2.56e-14 6knm:B, 7sus:A
5 6bd4:A 379 52 0.3571 0.0660 0.4808 2.70e-14
6 6ln2:A 437 52 0.3571 0.0572 0.4808 2.83e-14 3c59:A, 3c5t:A, 3iol:A, 5otu:A, 5otu:C, 5otv:C, 5otv:A, 5otw:C, 5otw:A, 5otx:A, 5otx:C, 4zgm:A
7 6iiv:A 461 52 0.3571 0.0542 0.4808 2.85e-14 1b13:A, 1b2j:A, 1b2o:A, 1b2o:B, 1be7:A, 1bfy:A, 1c09:A, 1c09:B, 1c09:C, 1fhh:A, 1fhm:A, 6iiu:A, 1irn:A, 1iro:A, 1r0h:A, 4rxn:A, 5rxn:A, 1smm:A, 1smu:A, 1smw:A, 1t9o:A, 1t9o:B, 1t9o:C, 1t9p:A, 1t9p:B, 1t9p:C, 1t9q:A
8 2pve:A 52 50 0.3571 0.4808 0.5000 3.38e-14 2pve:B, 2pve:C
9 4xnw:C 350 52 0.3571 0.0714 0.4808 3.49e-14 4xnv:A, 4xnw:A
10 6li2:A 347 54 0.3571 0.0720 0.4630 3.61e-14
11 6me8:A 449 51 0.3571 0.0557 0.4902 3.70e-14 6me6:A, 6me7:A, 6me9:A
12 5xpd:A 269 50 0.3571 0.0929 0.5000 4.72e-14
13 1yk5:A 53 52 0.3571 0.4717 0.4808 7.95e-14 2pya:A, 1yk4:A, 1yk5:B, 1yk5:C, 1yk5:D
14 5ai2:A 54 52 0.3286 0.4259 0.4423 3.30e-12 5ai3:A, 4ar3:A, 4ar4:A, 4ar5:A, 4ar6:A, 9bkl:A, 9bkp:A, 9bkt:A, 1bq8:A, 1bq9:A, 1brf:A, 1caa:A, 1cad:A, 1iu5:A, 1iu6:A, 4k9f:A, 3kyu:A, 3kyv:A, 3kyw:A, 3kyx:A, 3kyy:A, 5nw3:A, 5ome:A, 3ryg:A, 3rz6:A, 3rzt:A, 3ss2:A, 1vcx:A, 1zrp:A
15 8ito:B 74 54 0.3286 0.3108 0.4259 5.28e-12 8ito:A
16 2kkd:A 52 49 0.3286 0.4423 0.4694 1.24e-11 2ql0:A, 1rb9:A, 1rdv:A, 2rdv:A, 2rdv:B, 2rdv:C, 7rxn:A, 8rxn:A
17 7f1t:A 423 52 0.3429 0.0567 0.4615 1.42e-11 6akx:A, 6akx:B, 6aky:A, 5d65:B, 5d65:A, 5d65:D, 4mbs:A, 4mbs:B, 5uiw:A
18 2pvx:B 54 51 0.3286 0.4259 0.4510 1.67e-11 2pvx:A, 2pvx:C, 2pvx:D, 2pvx:E, 2pvx:F, 2pvx:G, 2pvx:H
19 2dsx:A 52 47 0.3429 0.4615 0.5106 2.01e-11 1rdg:A
20 2ms3:A 57 50 0.2571 0.3158 0.3600 4.51e-10
21 8f6t:A 428 40 0.2571 0.0421 0.4500 8.12e-09
22 1s24:A 56 47 0.2714 0.3393 0.4043 7.43e-08
23 2v3b:B 53 51 0.2714 0.3585 0.3725 6.60e-07
24 6rxn:A 45 48 0.2714 0.4222 0.3958 3.04e-05
25 2kn9:A 81 50 0.2286 0.1975 0.3200 1.36e-04 7a9a:A, 7a9a:B, 7a9a:C, 7a9a:D, 7a9a:E, 7a9a:F, 7a9a:G, 7a9a:H
26 6rax:2 605 42 0.2000 0.0231 0.3333 0.092 6raw:2, 6ray:2
27 1b71:A 191 50 0.2143 0.0785 0.3000 0.22 1dvb:A, 1jyb:A, 1lkm:A, 1lko:A, 1lkp:A, 1qyb:A, 1ryt:A, 1s2z:A, 1s30:A
28 8ouw:2 701 45 0.2000 0.0200 0.3111 1.4
29 2j6a:A 136 28 0.1571 0.0809 0.3929 1.5 4qtt:A, 4qtt:C, 4qtu:A, 4qtu:C
30 8gra:H 613 41 0.1714 0.0196 0.2927 3.7 8gra:I, 8gra:G
31 7w1y:2 706 42 0.1571 0.0156 0.2619 4.8 7pfo:2, 7plo:2, 8q6o:A, 8q6o:2, 8q6p:2, 7w1y:A, 6xtx:2, 6xty:2
32 7aih:BP 195 18 0.1429 0.0513 0.5556 5.2 7am2:BP, 7ane:BP
33 5t2o:A 293 31 0.1571 0.0375 0.3548 5.8
34 1gpz:A 368 62 0.2429 0.0462 0.2742 6.6 1gpz:B
35 1go7:P 462 32 0.1571 0.0238 0.3438 7.0 1go8:P, 3hb2:P, 3hbu:P, 1k7g:A, 1k7i:A, 1k7q:A
36 8a1d:A 533 54 0.2143 0.0281 0.2778 7.8 8a1d:B, 8a1d:C, 8a1d:D, 8a1d:E, 8a1d:F, 8a1d:G, 8a1d:H, 8a1d:I, 8a1d:J, 8a1d:K, 8a1d:L, 8a1d:M, 8a1d:N, 8a1d:O, 8a1d:P, 8a1s:A, 8a1s:B, 8a1s:C, 8a1s:D, 8a1s:E, 8a1s:F, 8a1s:G, 8a1s:H, 8a1s:I, 8a1s:J, 8a1s:K, 8a1s:L, 8a1s:M, 8a1s:N, 8a1s:O, 8a1s:P

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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