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BioLiP Library
>protein
KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHTSVS

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1fjl:A 65 65 1.0000 1.0000 1.0000 9.25e-42 1fjl:B, 1fjl:C
2 3cmy:A 60 59 0.7692 0.8333 0.8475 1.23e-30
3 3a01:F 61 58 0.6462 0.6885 0.7241 2.37e-26 3a01:B, 3lnq:A
4 8osb:E 62 56 0.5846 0.6129 0.6786 9.51e-25
5 2lkx:A 68 58 0.5692 0.5441 0.6379 9.91e-21
6 9b8u:B 66 51 0.5077 0.5000 0.6471 5.27e-20 9b8u:A, 9b8u:C, 9b8u:D
7 8ejo:A 56 54 0.4615 0.5357 0.5556 4.99e-16 8ejo:B, 8ejp:A, 8ejp:B
8 6e8c:A 135 54 0.4923 0.2370 0.5926 1.32e-15 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
9 6e8c:A 135 54 0.4000 0.1926 0.4815 9.25e-13 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
10 8pna:A 67 60 0.4154 0.4030 0.4500 6.07e-14 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
11 4rdu:D 62 57 0.3692 0.3871 0.4211 1.08e-12 4rdu:A, 4xrs:I, 4xrs:G
12 2me6:A 71 59 0.3692 0.3380 0.4068 1.40e-11
13 1ig7:A 58 57 0.3846 0.4310 0.4386 1.41e-11
14 5hod:A 61 54 0.3692 0.3934 0.4444 4.53e-11 5hod:D
15 8eml:A 58 57 0.3846 0.4310 0.4386 5.04e-11 8eml:B
16 2h1k:B 60 58 0.4000 0.4333 0.4483 3.54e-10 2h1k:A
17 1jgg:A 57 57 0.4000 0.4561 0.4561 2.40e-09 1jgg:B
18 3a01:A 78 60 0.3538 0.2949 0.3833 4.07e-09 3a01:E
19 4qtr:C 57 54 0.3692 0.4211 0.4444 8.17e-09 4qtr:A, 4qtr:B, 4qtr:D
20 3rkq:A 58 52 0.3385 0.3793 0.4231 1.27e-08 3rkq:B
21 1zq3:P 68 58 0.3538 0.3382 0.3966 2.32e-08
22 2r5z:A 75 58 0.3692 0.3200 0.4138 2.45e-08 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
23 6m3d:C 108 59 0.3538 0.2130 0.3898 2.50e-08 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
24 6m3d:C 108 58 0.3538 0.2130 0.3966 1.93e-07 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
25 6es3:K 72 54 0.3385 0.3056 0.4074 7.96e-08 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
26 4uus:A 67 56 0.3538 0.3433 0.4107 8.22e-08 4uus:E
27 4cyc:A 66 61 0.3538 0.3485 0.3770 1.53e-07 1b8i:A
28 1b72:A 68 54 0.3385 0.3235 0.4074 1.65e-07
29 8ik5:C 67 57 0.3385 0.3284 0.3860 1.90e-07 8ike:C, 8ilw:C
30 1puf:A 77 57 0.3385 0.2857 0.3860 2.19e-07 2lp0:A
31 1ahd:P 68 61 0.3538 0.3382 0.3770 2.29e-07
32 5eea:G 63 62 0.3385 0.3492 0.3548 2.53e-07 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
33 1nk2:P 77 59 0.3385 0.2857 0.3729 2.84e-07 1nk3:P
34 2ld5:A 67 57 0.3077 0.2985 0.3509 3.66e-07
35 5flv:M 229 56 0.3385 0.0961 0.3929 4.61e-07 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
36 5zjr:A 64 57 0.3538 0.3594 0.4035 9.16e-07 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
37 4rbo:A 55 50 0.2769 0.3273 0.3600 2.20e-06 4rbo:D
38 3d1n:I 150 58 0.2923 0.1267 0.3276 7.59e-05 3d1n:K, 3d1n:J, 3d1n:L, 3d1n:M, 3d1n:N, 3d1n:O, 3d1n:P
39 1le8:A 53 40 0.2308 0.2830 0.3750 1.35e-04 1akh:A, 1yrn:A
40 5wc9:A 136 51 0.3077 0.1471 0.3922 3.21e-04 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
41 1lfu:P 82 61 0.2923 0.2317 0.3115 3.42e-04 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
42 4egc:A 539 42 0.2462 0.0297 0.3810 5.08e-04
43 4j19:A 77 70 0.3231 0.2727 0.3000 0.001 4j19:B
44 1gt0:C 137 54 0.2615 0.1241 0.3148 0.040 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
45 8g8e:X 140 54 0.2462 0.1143 0.2963 0.049 8g87:X, 8g88:X, 8g8b:X, 8g8g:X, 8sps:M, 7u0g:K
46 4xrm:B 64 32 0.2000 0.2031 0.4062 0.28 5bng:B, 5bng:A, 5eg0:A, 5ego:A, 8vts:B, 8vts:D, 8vtt:D, 4xrm:A, 4xrs:A, 4xrs:B
47 8bx1:A 127 40 0.1846 0.0945 0.3000 0.44
48 3l1p:A 147 40 0.1846 0.0816 0.3000 0.59 8bx2:A, 6ht5:E, 3l1p:B, 8sps:L, 8spu:L, 6t90:K, 7u0g:M, 7u0g:L, 7u0i:L, 7u0i:M
49 7xrc:C 134 52 0.2462 0.1194 0.3077 0.63 2xsd:C
50 2h8r:A 176 73 0.2923 0.1080 0.2603 2.9 2h8r:B
51 6fqp:A 67 32 0.1846 0.1791 0.3750 4.9 6fqp:B, 6fqq:A, 6fqq:B, 6fqq:D, 6fqq:E
52 5mhf:D 767 19 0.1231 0.0104 0.4211 6.2 5mhf:A, 5mhf:B, 5mhf:C
53 4dna:A 461 28 0.1692 0.0239 0.3929 7.1 4dna:B
54 8pi9:B 177 72 0.2923 0.1073 0.2639 7.6 1ic8:A, 1ic8:B, 8pi7:A, 8pi7:B, 8pi8:A, 8pi8:B, 8pi9:A, 8pia:A, 8pia:B
55 6btl:A 492 34 0.2000 0.0264 0.3824 8.6 6btl:B, 6bu7:A, 6bu7:B, 4nev:A, 4nev:B, 7nvp:AAA, 7nvp:BBB, 6oex:B, 6oex:A, 6oey:B, 6oey:A, 6oez:B, 6oez:A, 8pf3:A, 8pf3:B, 8pf3:C, 8pf3:D, 8pf4:A, 8pf4:B, 8pf4:C, 8pf4:D, 8pf5:A, 8pf5:B, 8pf5:C, 8pf5:D, 6rb5:A, 6rb5:B, 5s9s:A, 5s9s:B, 5s9t:A, 5s9t:B, 5s9u:A, 5s9u:B, 5s9v:A, 5s9v:B, 5s9w:A, 5s9w:B, 5s9x:A, 5s9x:B, 5s9y:A, 5s9y:B, 5s9z:A, 5s9z:B, 5sa0:A, 5sa0:B, 5sa1:A, 5sa1:B, 5sa2:A, 5sa2:B, 5sa3:A, 5sa3:B, 5smj:A, 5smj:B, 2wba:A, 2wba:B, 2woi:A, 2woi:B, 2woi:C, 2woi:D, 2wov:A, 2wov:B, 2wov:C, 2wov:D, 2wow:A, 2wow:B, 2wow:C, 2wow:D, 2wp5:A, 2wp5:B, 2wp5:C, 2wp5:D, 2wp6:A, 2wp6:B, 2wp6:C, 2wp6:D, 2wpc:A, 2wpc:B, 2wpc:C, 2wpc:D, 2wpe:A, 2wpe:B, 2wpe:C, 2wpe:D, 2wpf:A, 2wpf:B, 2wpf:C, 2wpf:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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