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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●DeepMSA2 ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP Library
>protein
KKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMVPTEEKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDR
PAPISDKEVDAIMNRLQQ

The query sequence (length=98) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ms0:F 181 112 1.0000 0.5414 0.8750 3.50e-66 6c6u:N, 8e3f:F, 8e5k:F, 8e5o:F, 8e6x:F, 8e6z:F, 8g31:u, 8g34:u, 6gov:G, 7py0:G, 7py1:G, 7py5:G, 7py8:G, 6tqn:G, 6tqo:G, 6vu3:AB, 6vyq:AB, 6vyr:AB, 6vys:AB, 6vyt:AB, 6vyu:AB, 6vyw:AB, 6vyx:AB, 6vyy:AB, 6vyz:AB, 6vz2:AB, 6vz3:AB, 6vz5:AB, 6vz7:AB, 6x6t:AB, 6x7f:AB, 6x7k:AB, 6x9q:AB, 6xdq:AB, 6xdr:AB, 6xgf:AB, 6xii:AB, 6xij:AB, 6z9p:G, 6z9q:G, 6z9r:G, 6ztj:CF, 6ztl:CF, 6ztn:CF
2 6xav:L 95 98 0.9694 1.0000 0.9694 3.98e-66
3 8ehq:G 110 110 0.4286 0.3818 0.3818 1.13e-22 8ej3:G, 8eoe:G, 8eof:G, 8exy:G
4 8syi:G 120 96 0.3571 0.2917 0.3646 1.21e-18 8urw:G
5 8e74:Z 122 100 0.3776 0.3033 0.3700 1.08e-17 8e82:Z
6 8f5g:C 175 104 0.3061 0.1714 0.2885 3.55e-05 8f5g:A
7 8f5g:B 144 69 0.2245 0.1528 0.3188 0.092
8 8pv4:CW 550 48 0.1531 0.0273 0.3125 0.40 8pv6:CW, 8pv8:CW
9 4zn3:A 147 32 0.1224 0.0816 0.3750 0.69
10 5mmi:K 203 29 0.1224 0.0591 0.4138 0.75 6eri:AJ, 5h1s:L, 5mlc:L, 5mmm:K, 4v61:BL, 5x8p:K, 5x8t:K
11 5u5n:A 279 73 0.1939 0.0681 0.2603 0.85 5u5i:A, 5u5i:B, 5u5n:B
12 4fe9:A 446 58 0.1531 0.0336 0.2586 1.6
13 8cls:A 837 46 0.1531 0.0179 0.3261 2.8
14 8cls:B 853 46 0.1531 0.0176 0.3261 2.8
15 8tnq:C 35 24 0.1122 0.3143 0.4583 6.3 8tnp:C, 8tnr:C
16 3poy:A 1005 27 0.1327 0.0129 0.4815 7.5 3asi:A, 3b3q:E, 3b3q:F, 3biw:E, 3biw:F, 3biw:G, 3bod:A, 2h0b:A, 2h0b:B, 2h0b:C, 2h0b:D, 2r16:A, 2r1d:H, 2r1d:B, 2r1d:D, 2r1d:I, 3vkf:C, 3vkf:D, 2wqz:C, 2wqz:D, 2xb6:C, 2xb6:D, 5z8y:B, 5z8y:D, 5z8y:F, 5z8y:H
17 8phe:A 551 31 0.0918 0.0163 0.2903 8.3 8phe:B, 8phf:A, 8phf:B
18 8a3l:i 142 26 0.1122 0.0775 0.4231 9.8 7abz:J, 7ac7:J, 7acj:J, 7acr:J, 5ady:J, 5afi:J, 5aka:J, 8akn:i, 8am9:i, 8ana:i, 8ap4:i, 9ax7:i, 9ax8:J, 8aye:i, 8b0x:i, 7b5k:J, 8b7y:R, 3bbx:J, 8bf7:G, 8bge:G, 8bgh:G, 8bh4:G, 8bhj:G, 8bhl:G, 8bhn:G, 8bhp:G, 8bil:G, 8bim:G, 7bl2:J, 7bl3:J, 7bl4:J, 7bl5:J, 7bl6:J, 6bu8:12, 7bv8:K, 6by1:CJ, 6by1:DJ, 6c4i:K, 8c8x:J, 8c8y:J, 8c8z:J, 8c90:J, 8c91:J, 8c92:J, 8c93:J, 8c94:J, 8c95:J, 8c96:J, 8c98:J, 8c99:J, 8cam:i, 8ceu:i, 8cgd:i, 8cgk:i, 8cgv:i, 9cg5:i, 9cg6:i, 9cg7:i, 9cl9:J, 7cpj:J, 4csu:J, 7d6z:J, 7d80:i, 6dnc:N, 8e30:O, 8e32:O, 8e33:O, 8e35:O, 8e36:O, 8e3l:O, 8e3m:O, 8e3o:O, 8e41:O, 8e42:O, 8e43:O, 8e44:O, 8e45:O, 8e46:O, 8e47:O, 8e48:O, 8e49:O, 8eiu:i, 8ekc:L, 8emm:i, 6enf:J, 6enj:J, 6enu:J, 9fbv:i, 8fiz:BR, 8fto:i, 8fzd:L, 8fze:L, 8fzf:L, 8fzg:L, 8fzh:L, 8fzi:L, 8fzj:L, 8g2u:J, 8g31:J, 8g34:J, 8g38:J, 8g6w:i, 8g6x:i, 8g6y:i, 8g7p:L, 8g7q:L, 8g7r:L, 8g7s:L, 5gad:K, 5gae:K, 5gaf:K, 5gag:K, 5gah:K, 6gbz:J, 6gc0:J, 6gc4:J, 6gc6:J, 6gc7:J, 6gc8:J, 6gwt:J, 6gxm:J, 6gxn:J, 6gxo:J, 6gxp:J, 6h4n:J, 5h5u:K, 6h58:J, 6h58:JJ, 6hrm:J, 8hsp:i, 8htz:i, 8hu1:i, 6i0y:J, 6i7v:DK, 6i7v:CK, 8ifb:i, 8ifc:i, 5iqr:J, 5it8:CK, 5it8:DK, 8j1z:i, 2j28:J, 3j5l:J, 5j5b:CK, 5j5b:DK, 3j7z:J, 5j7l:CK, 5j7l:DK, 3j8g:J, 5j88:CK, 5j88:DK, 5j8a:CK, 5j8a:DK, 3j9y:J, 3j9z:LF, 5j91:CK, 5j91:DK, 3ja1:LL, 3jbu:j, 3jbv:j, 3jcd:J, 3jce:J, 3jcj:I, 3jcn:J, 5jc9:CK, 5jc9:DK, 7jss:j, 7jsw:j, 7jsz:j, 5jte:BJ, 7jt1:j, 7jt2:j, 7jt3:j, 5ju8:BJ, 7k00:i, 7k50:j, 7k51:j, 7k52:j, 7k53:j, 7k54:j, 7k55:j, 5kcr:1N, 5kcs:1N, 5kps:J, 5kpv:I, 5kpw:I, 5kpx:I, 5l3p:N, 6lkq:0, 7lv0:j, 7lvk:R, 5lza:J, 5lzb:J, 5lzc:J, 5lzd:J, 5lze:J, 5lzf:J, 7m5d:J, 5mdv:J, 5mdw:J, 5mdy:J, 5mdz:J, 5mgp:J, 7n1p:LM, 7n2c:LM, 7n2u:LM, 7n2v:LM, 7n30:LM, 7n31:LM, 7nbu:i, 5nco:K, 5np6:h, 7nso:J, 7nsp:J, 7nsq:J, 5nwy:W, 7nwt:J, 7nww:I, 7o19:BJ, 7o1a:BJ, 7o1c:BJ, 5o2r:J, 6o9j:J, 6o9k:J, 7ode:R, 6ofx:j, 6og7:j, 6ogf:j, 6ogg:j, 6ogi:j, 7oif:I, 7oig:I, 7oii:I, 7oiz:i, 7oj0:i, 6om6:J, 6ore:J, 6orl:J, 6osk:J, 6osq:J, 6ost:J, 6ot3:J, 7ot5:I, 7otc:J, 6ouo:J, 8p16:J, 8p17:J, 8p18:J, 7p3k:i, 6pc5:O, 6pc6:O, 6pc7:O, 6pc8:O, 6pch:O, 6pcq:O, 6pcr:O, 6pcs:O, 6pct:O, 8peg:m, 8phj:i, 6pj6:R, 7pjs:J, 7pjt:J, 7pju:J, 7pjv:J, 7pjw:J, 7pjx:J, 7pjy:J, 7pjz:J, 8pkl:m, 8pva:i, 7q4k:BJ, 8q4f:i, 6q97:J, 6q98:J, 6q9a:J, 8qbt:J, 6qdw:j, 7qg8:W, 7qgh:W, 7qgn:W, 7qgr:W, 8qk7:J, 8qoa:i, 7qq3:R, 6qul:K, 8r6c:i, 8r8m:i, 8rpy:J, 8rpz:J, 8rq0:J, 8rq2:J, 6s0k:K, 7s1g:R, 7s1h:R, 7s1i:R, 7s1j:R, 7s1k:R, 7sa4:J, 7ss9:j, 7ssd:j, 7ssl:j, 7ssn:j, 7sso:j, 7ssw:j, 7st2:j, 7st6:j, 7st7:j, 8syl:L, 6szs:J, 8t5d:J, 8t5h:J, 6tbv:L131, 6tc3:L131, 7tos:L13, 4u1u:BJ, 4u1u:DJ, 4u1v:BJ, 4u1v:DJ, 4u20:BJ, 4u20:DJ, 4u24:BJ, 4u24:DJ, 4u25:BJ, 4u25:DJ, 4u26:BJ, 4u26:DJ, 4u27:BJ, 4u27:DJ, 5u4i:K, 6u48:CK, 5u9f:12, 5u9g:12, 7ug7:LM, 7uph:R, 8upo:s, 8upr:s, 8uql:s, 8uqm:s, 8uqp:s, 8ur0:s, 8urh:s, 8uri:s, 8urx:s, 8ury:s, 4uy8:J, 5uyk:12, 5uyl:12, 5uym:12, 5uyn:12, 5uyp:12, 5uyq:12, 4v4h:BJ, 4v4h:DJ, 4v4q:BJ, 4v4q:DJ, 4v4v:BH, 4v4w:BH, 4v50:BJ, 4v50:DJ, 4v52:BJ, 4v52:DJ, 4v53:BJ, 4v53:DJ, 4v54:BJ, 4v54:DJ, 4v55:BJ, 4v55:DJ, 4v56:BJ, 4v56:DJ, 4v57:BJ, 4v57:DJ, 4v5b:AJ, 4v5b:CJ, 4v5h:BJ, 4v5y:BJ, 4v5y:DJ, 4v64:BJ, 4v64:DJ, 4v65:B6, 4v66:B6, 4v69:BJ, 4v6c:BJ, 4v6c:DJ, 4v6d:BJ, 4v6d:DJ, 4v6e:BJ, 4v6e:DJ, 4v6k:AK, 4v6l:BK, 4v6m:BJ, 4v6n:AL, 4v6o:BL, 4v6p:BL, 4v6q:BL, 4v6r:BL, 4v6s:AL, 4v6t:BJ, 4v6v:BN, 4v6y:BJ, 4v6z:BJ, 4v70:BJ, 4v71:BJ, 4v72:BJ, 4v73:BJ, 4v74:BJ, 4v75:BJ, 4v76:BJ, 4v77:BJ, 4v78:BJ, 4v79:BJ, 4v7a:BJ, 4v7b:BJ, 4v7c:BL, 4v7d:AM, 4v7i:AJ, 4v7s:BJ, 4v7s:DJ, 4v7t:BJ, 4v7t:DJ, 4v7u:BJ, 4v7u:DJ, 4v7v:BJ, 4v7v:DJ, 4v85:BN, 4v89:BN, 4v9c:BJ, 4v9c:DJ, 4v9d:CJ, 4v9d:DJ, 4v9o:AJ, 4v9o:CJ, 4v9o:EJ, 4v9o:GJ, 4v9p:AJ, 4v9p:CJ, 4v9p:EJ, 4v9p:GJ, 8vs9:L13, 8vsa:L13, 6vu3:s, 6vwl:G, 6vwm:H, 6vwn:G, 6vyq:s, 6vyr:s, 6vys:s, 6vyt:s, 6vyu:s, 6vyw:s, 6vyx:s, 6vyy:s, 6vyz:s, 6vz2:s, 6vz3:s, 6vz5:s, 6vz7:s, 6vzj:s, 8w51:K, 5wdt:J, 6wd0:j, 6wd1:j, 6wd2:j, 6wd3:j, 6wd4:j, 6wd5:j, 6wd6:j, 6wd7:j, 6wd8:j, 6wd9:j, 6wda:j, 6wdb:j, 6wdc:j, 6wdd:j, 6wde:j, 6wdf:j, 6wdg:j, 6wdh:j, 6wdi:j, 6wdj:j, 6wdk:j, 6wdl:j, 6wdm:j, 5we4:J, 5we6:J, 4wf1:BJ, 4wf1:DJ, 5wf0:J, 5wfk:J, 5wfs:J, 6wnt:j, 6wnv:j, 6wnw:j, 4woi:BJ, 4woi:CJ, 4www:RJ, 4www:YJ, 6wyv:O, 6x6t:s, 6x7f:s, 6x7k:s, 6x9q:s, 6xdq:s, 6xdr:s, 6xgf:s, 6xii:s, 6xij:s, 6xz7:J, 6xza:J2, 6xzb:J2, 6y69:J, 7y7c:i, 7y7d:i, 7y7e:i, 7y7f:i, 7y7g:i, 7y7h:i, 4ybb:CK, 4ybb:DK, 7yla:R, 6ys3:j, 6ysr:J, 6yss:J, 6yst:J, 6ysu:J, 7z20:j, 7zod:j, 7zp8:j, 7zq5:j, 7zq6:j, 6ztj:BK, 6ztl:BK, 6ztm:BK, 6ztn:BK, 6zto:BK, 6ztp:BK, 7zta:L131, 6zu1:BK

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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