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BioLiP Library
>protein
GSMADTRRRQNHSCDPCRKGKRRCDAPENRNEANENGWVSCSNCKRWNKDCTFNWLSSQRSKNSS

The query sequence (length=65) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2alc:A 65 65 1.0000 1.0000 1.0000 3.26e-42 3alc:A, 1f4s:P, 1f5e:P
2 1cld:A 33 43 0.2000 0.3939 0.3023 1.3
3 6gys:B 579 45 0.1692 0.0190 0.2444 1.3 6f07:B, 6gyp:B, 6gys:C, 6gys:J, 6gys:I, 6gyu:B, 7k7g:M, 8ow1:CE
4 6qf7:B 244 12 0.1077 0.0287 0.5833 4.8 6b74:B, 6b77:B, 6l63:A, 6l63:C, 6qf7:D, 8r8d:B, 8r8d:A, 6x0s:A, 6x0s:B, 6x0s:C, 6x0t:A, 6x0t:B, 6x0t:C
5 6h5l:A 506 21 0.1231 0.0158 0.3810 4.9
6 8csz:D 494 26 0.1385 0.0182 0.3462 6.8
7 5j55:A 480 35 0.1385 0.0187 0.2571 8.0 5j53:A, 5j54:A, 7qr6:A, 7qr6:B, 7qr6:C
8 5jmd:A 646 35 0.1846 0.0186 0.3429 8.2 5jmf:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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