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BioLiP Library
>dna
gcacaaatccattgacaaaagaaggctaaaagggca

The query sequence (length=36) is searched through a non-redundant set of database sequences dna_nr.fasta.gz clustered at 100% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6psr:O 36 36 1.0000 1.0000 1.0000 1.63e-14
2 6psw:P 62 35 0.9722 0.5645 1.0000 5.87e-14
3 6psw:O 62 35 0.9722 0.5645 1.0000 5.87e-14
4 6psv:P 50 35 0.9722 0.7000 1.0000 5.87e-14
5 6psv:O 55 35 0.9722 0.6364 1.0000 5.87e-14
6 6psu:P 37 35 0.9722 0.9459 1.0000 5.87e-14
7 6psu:O 42 35 0.9722 0.8333 1.0000 5.87e-14
8 6pst:O 50 35 0.9722 0.7000 1.0000 5.87e-14
9 6pss:O 43 35 0.9722 0.8140 1.0000 5.87e-14
10 6psr:P 35 35 0.9722 1.0000 1.0000 5.87e-14
11 6psq:P 50 35 0.9722 0.7000 1.0000 5.87e-14
12 6psq:O 50 35 0.9722 0.7000 1.0000 5.87e-14
13 6oul:P 61 35 0.9722 0.5738 1.0000 5.87e-14
14 6pst:P 51 34 0.9444 0.6667 1.0000 2.11e-13
15 6pss:P 43 34 0.9444 0.7907 1.0000 2.11e-13
16 6oul:Q 56 34 0.9444 0.6071 1.0000 2.11e-13

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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