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BioLiP Library
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 9gd2:A (4.2) BS01 dna N/A N/A P84233 39270644
    2 9gd2:A (4.2) BS02 dna N/A N/A P84233 39270644
    3 9gd2:B (4.2) BS01 dna N/A N/A P62799 39270644
    4 9gd2:B (4.2) BS02 dna N/A N/A P62799 39270644
    5 9gd2:C (4.2) BS01 dna N/A N/A P06897 39270644
    6 9gd2:C (4.2) BS02 dna N/A N/A P06897 39270644
    7 9gd2:C (4.2) BS03 peptide N/A N/A P06897 39270644
    8 9gd2:D (4.2) BS01 dna N/A N/A P02281 39270644
    9 9gd2:D (4.2) BS02 peptide N/A N/A P02281 39270644
    10 9gd2:E (4.2) BS01 dna N/A N/A P84233 39270644
    11 9gd2:E (4.2) BS02 dna N/A N/A P84233 39270644
    12 9gd2:E (4.2) BS03 peptide N/A N/A P84233 39270644
    13 9gd2:F (4.2) BS01 dna N/A N/A P62799 39270644
    14 9gd2:F (4.2) BS02 dna N/A N/A P62799 39270644
    15 9gd2:G (4.2) BS01 dna N/A N/A P06897 39270644
    16 9gd2:G (4.2) BS02 dna N/A N/A P06897 39270644
    17 9gd2:H (4.2) BS01 dna N/A N/A P02281 39270644
    18 9gd2:H (4.2) BS02 dna N/A N/A P02281 39270644
    19 9gd2:K (4.2) BS01 dna N/A N/A P84233 39270644
    20 9gd2:K (4.2) BS02 dna N/A N/A P84233 39270644
    21 9gd2:L (4.2) BS01 dna N/A N/A P62799 39270644
    22 9gd2:L (4.2) BS02 dna N/A N/A P62799 39270644
    23 9gd2:M (4.2) BS01 dna N/A N/A P06897 39270644
    24 9gd2:M (4.2) BS02 dna N/A N/A P06897 39270644
    25 9gd2:N (4.2) BS01 dna N/A N/A P02281 39270644
    26 9gd2:O (4.2) BS01 dna N/A N/A P84233 39270644
    27 9gd2:O (4.2) BS02 dna N/A N/A P84233 39270644
    28 9gd2:P (4.2) BS01 dna N/A N/A P62799 39270644
    29 9gd2:P (4.2) BS02 dna N/A N/A P62799 39270644
    30 9gd2:Q (4.2) BS01 peptide N/A N/A P02281 39270644
    31 9gd2:R (4.2) BS01 peptide N/A N/A P06897 39270644
    32 9gd2:W (4.2) BS01 dna N/A N/A P32657 39270644
    33 9gd2:W (4.2) BS02 dna N/A N/A P32657 39270644
    34 9gd2:W (4.2) BS03 peptide N/A N/A P32657 39270644
    35 9gd2:W (4.2) BS04 ADP N/A N/A P32657 39270644
    36 9gd2:W (4.2) BS05 BEF N/A N/A P32657 39270644
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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