Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●D-I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●D-QUARK ●DRfold ●DRfold2 ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred ●TCRfinder

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●DeepMSA2 ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP Library
Download all results in tab-seperated text for 27 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7rd1:A (3.07) BS01 peptide ? GO:0005198 ... G9G854 34851659
    2 7rd1:A (3.07) BS02 peptide ? GO:0005198 ... G9G854 34851659
    3 7rd1:B (3.07) BS01 peptide ? GO:0005198 ... G9G854 34851659
    4 7rd1:B (3.07) BS02 peptide ? GO:0005198 ... G9G854 34851659
    5 7rd1:C (3.07) BS01 peptide ? GO:0005198 ... G9G854 34851659
    6 7rd1:C (3.07) BS02 peptide ? GO:0005198 ... G9G854 34851659
    7 7rd1:C (3.07) BS03 peptide ? GO:0005198 ... G9G854 34851659
    8 7rd1:D (3.07) BS01 peptide ? GO:0005198 ... G9G854 34851659
    9 7rd1:D (3.07) BS02 peptide ? GO:0005198 ... G9G854 34851659
    10 7rd1:D (3.07) BS03 peptide ? GO:0005198 ... G9G854 34851659
    11 7rd1:E (3.07) BS01 peptide ? GO:0005198 ... G9G854 34851659
    12 7rd1:E (3.07) BS02 peptide ? GO:0005198 ... G9G854 34851659
    13 7rd1:F (3.07) BS01 peptide ? GO:0005198 ... G9G854 34851659
    14 7rd1:F (3.07) BS02 peptide ? GO:0005198 ... G9G854 34851659
    15 7rd1:G (3.07) BS01 peptide ? GO:0005198 ... G9G854 34851659
    16 7rd1:G (3.07) BS02 peptide ? GO:0005198 ... G9G854 34851659
    17 7rd1:H (3.07) BS01 peptide ? GO:0005198 ... G9G854 34851659
    18 7rd1:H (3.07) BS02 peptide ? GO:0005198 ... G9G854 34851659
    19 7rd1:I (3.07) BS01 peptide ? GO:0005198 ... G9G854 34851659
    20 7rd1:I (3.07) BS02 peptide ? GO:0005198 ... G9G854 34851659
    21 7rd1:J (3.07) BS01 peptide ? GO:0005198 ... G9G854 34851659
    22 7rd1:J (3.07) BS02 peptide ? GO:0005198 ... G9G854 34851659
    23 7rd1:J (3.07) BS03 peptide ? GO:0005198 ... G9G854 34851659
    24 7rd1:K (3.07) BS01 peptide ? GO:0005198 ... G9G854 34851659
    25 7rd1:K (3.07) BS02 peptide ? GO:0005198 ... G9G854 34851659
    26 7rd1:L (3.07) BS01 peptide ? GO:0005198 ... G9G854 34851659
    27 7rd1:S (3.07) BS01 peptide ? GO:0019028 ... G9G860 34851659
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417