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BioLiP Library
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6xu1:A (2.2) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    2 6xu1:A (2.2) BS02 MG 3.1.5.- N/A Q9Y3Z3 32576829
    3 6xu1:A (2.2) BS03 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    4 6xu1:A (2.2) BS04 GTP 3.1.5.- N/A Q9Y3Z3 32576829
    5 6xu1:A (2.2) BS05 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    6 6xu1:A (2.2) BS06 GTP 3.1.5.- N/A Q9Y3Z3 32576829
    7 6xu1:A (2.2) BS07 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    8 6xu1:A (2.2) BS08 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    9 6xu1:B (2.2) BS01 GTP 3.1.5.- N/A Q9Y3Z3 32576829
    10 6xu1:B (2.2) BS02 FE 3.1.5.- N/A Q9Y3Z3 32576829
    11 6xu1:B (2.2) BS03 MG 3.1.5.- N/A Q9Y3Z3 32576829
    12 6xu1:B (2.2) BS04 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    13 6xu1:B (2.2) BS05 GTP 3.1.5.- N/A Q9Y3Z3 32576829
    14 6xu1:B (2.2) BS06 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    15 6xu1:B (2.2) BS07 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    16 6xu1:B (2.2) BS08 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    17 6xu1:C (2.2) BS01 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    18 6xu1:C (2.2) BS02 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    19 6xu1:C (2.2) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    20 6xu1:C (2.2) BS04 MG 3.1.5.- N/A Q9Y3Z3 32576829
    21 6xu1:C (2.2) BS05 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    22 6xu1:C (2.2) BS06 GTP 3.1.5.- N/A Q9Y3Z3 32576829
    23 6xu1:C (2.2) BS07 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    24 6xu1:C (2.2) BS08 GTP 3.1.5.- N/A Q9Y3Z3 32576829
    25 6xu1:D (2.2) BS01 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    26 6xu1:D (2.2) BS02 GTP 3.1.5.- N/A Q9Y3Z3 32576829
    27 6xu1:D (2.2) BS03 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    28 6xu1:D (2.2) BS04 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    29 6xu1:D (2.2) BS05 FE 3.1.5.- N/A Q9Y3Z3 32576829
    30 6xu1:D (2.2) BS06 MG 3.1.5.- N/A Q9Y3Z3 32576829
    31 6xu1:D (2.2) BS07 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    32 6xu1:D (2.2) BS08 GTP 3.1.5.- N/A Q9Y3Z3 32576829
    33 6xu1:E (2.2) BS01 FE 3.1.5.- N/A Q9Y3Z3 32576829
    34 6xu1:E (2.2) BS02 MG 3.1.5.- N/A Q9Y3Z3 32576829
    35 6xu1:E (2.2) BS03 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    36 6xu1:E (2.2) BS04 GTP 3.1.5.- N/A Q9Y3Z3 32576829
    37 6xu1:E (2.2) BS05 GTP 3.1.5.- N/A Q9Y3Z3 32576829
    38 6xu1:E (2.2) BS06 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    39 6xu1:E (2.2) BS07 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    40 6xu1:E (2.2) BS08 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    41 6xu1:F (2.2) BS01 GTP 3.1.5.- N/A Q9Y3Z3 32576829
    42 6xu1:F (2.2) BS02 GTP 3.1.5.- N/A Q9Y3Z3 32576829
    43 6xu1:F (2.2) BS03 FE 3.1.5.- N/A Q9Y3Z3 32576829
    44 6xu1:F (2.2) BS04 MG 3.1.5.- N/A Q9Y3Z3 32576829
    45 6xu1:F (2.2) BS05 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    46 6xu1:F (2.2) BS06 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    47 6xu1:F (2.2) BS07 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    48 6xu1:F (2.2) BS08 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    49 6xu1:G (2.2) BS01 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    50 6xu1:G (2.2) BS02 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    51 6xu1:G (2.2) BS03 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    52 6xu1:G (2.2) BS04 FE 3.1.5.- N/A Q9Y3Z3 32576829
    53 6xu1:G (2.2) BS05 MG 3.1.5.- N/A Q9Y3Z3 32576829
    54 6xu1:G (2.2) BS06 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    55 6xu1:G (2.2) BS07 GTP 3.1.5.- N/A Q9Y3Z3 32576829
    56 6xu1:G (2.2) BS08 GTP 3.1.5.- N/A Q9Y3Z3 32576829
    57 6xu1:H (2.2) BS01 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    58 6xu1:H (2.2) BS02 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    59 6xu1:H (2.2) BS03 GTP 3.1.5.- N/A Q9Y3Z3 32576829
    60 6xu1:H (2.2) BS04 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    61 6xu1:H (2.2) BS05 FE 3.1.5.- N/A Q9Y3Z3 32576829
    62 6xu1:H (2.2) BS06 MG 3.1.5.- N/A Q9Y3Z3 32576829
    63 6xu1:H (2.2) BS07 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    64 6xu1:H (2.2) BS08 GTP 3.1.5.- N/A Q9Y3Z3 32576829
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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