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BioLiP Library
Download all results in tab-seperated text for 71 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6xij:0 (8.0) BS01 rna ? GO:0002181 ... P0AG48 32820061
    2 6xij:1 (8.0) BS01 rna ? GO:0002181 ... P61175 32820061
    3 6xij:2 (8.0) BS01 rna ? GO:0000027 ... P0ADZ0 32820061
    4 6xij:3 (8.0) BS01 rna ? GO:0000027 ... P60624 32820061
    5 6xij:4 (8.0) BS01 rna ? GO:0000027 ... P68919 32820061
    6 6xij:9 (8.0) BS01 rna ? GO:0002181 ... P0A7J3 32820061
    7 6xij:AA (8.0) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    8 6xij:AA (8.0) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    9 6xij:AA (8.0) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    10 6xij:AA (8.0) BS04 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    11 6xij:AB (8.0) BS01 dna ? GO:0005515 ... P0AFG0 32820061
    12 6xij:AE (8.0) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    13 6xij:AE (8.0) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    14 6xij:AE (8.0) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    15 6xij:AE (8.0) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    16 6xij:AE (8.0) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    17 6xij:AE (8.0) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    18 6xij:C (8.0) BS01 rna ? GO:0002181 ... P0A7T7 32820061
    19 6xij:E (8.0) BS01 rna ? GO:0000028 ... P0A7U7 32820061
    20 6xij:F (8.0) BS01 rna ? GO:0000028 ... P68679 32820061
    21 6xij:G (8.0) BS01 rna ? GO:0000028 ... P0A7V0 32820061
    22 6xij:I (8.0) BS01 rna ? GO:0000028 ... P0A7V3 32820061
    23 6xij:J (8.0) BS01 rna ? GO:0000028 ... P0A7V8 32820061
    24 6xij:K (8.0) BS01 rna ? GO:0000028 ... P0A7W1 32820061
    25 6xij:K (8.0) BS02 rna ? GO:0000028 ... P0A7W1 32820061
    26 6xij:L (8.0) BS01 rna ? GO:0002181 ... P02358 32820061
    27 6xij:M (8.0) BS01 rna ? GO:0000028 ... P02359 32820061
    28 6xij:M (8.0) BS02 rna ? GO:0000028 ... P02359 32820061
    29 6xij:N (8.0) BS01 rna ? GO:0000028 ... P0A7W7 32820061
    30 6xij:O (8.0) BS01 rna ? GO:0000049 ... P0A7X3 32820061
    31 6xij:P (8.0) BS01 rna ? GO:0000049 ... P0A7R5 32820061
    32 6xij:Q (8.0) BS01 rna ? GO:0002181 ... P0A7R9 32820061
    33 6xij:R (8.0) BS01 rna ? GO:0000049 ... P0A7S3 32820061
    34 6xij:S (8.0) BS01 rna ? GO:0000028 ... P0AG59 32820061
    35 6xij:T (8.0) BS01 rna ? GO:0000028 ... P0ADZ4 32820061
    36 6xij:T (8.0) BS02 rna ? GO:0000028 ... P0ADZ4 32820061
    37 6xij:U (8.0) BS01 rna ? GO:0000028 ... P0A7T3 32820061
    38 6xij:V (8.0) BS01 rna ? GO:0000028 ... P0AG63 32820061
    39 6xij:W (8.0) BS01 rna ? GO:0000028 ... P0A7U3 32820061
    40 6xij:X (8.0) BS01 rna ? GO:0000049 ... P0A7S9 32820061
    41 6xij:X (8.0) BS02 rna ? GO:0000049 ... P0A7S9 32820061
    42 6xij:b (8.0) BS01 rna ? GO:0000027 ... P0A7L8 32820061
    43 6xij:b (8.0) BS02 rna ? GO:0000027 ... P0A7L8 32820061
    44 6xij:c (8.0) BS01 rna ? GO:0000027 ... P0A7M2 32820061
    45 6xij:e (8.0) BS01 rna ? GO:0000027 ... P0A7M6 32820061
    46 6xij:f (8.0) BS01 rna ? GO:0000027 ... P0AG51 32820061
    47 6xij:f (8.0) BS02 rna ? GO:0000027 ... P0AG51 32820061
    48 6xij:g (8.0) BS01 rna ? GO:0002181 ... P0A7M9 32820061
    49 6xij:h (8.0) BS01 rna ? GO:0000027 ... P60422 32820061
    50 6xij:i (8.0) BS01 rna ? GO:0000027 ... P0A7N4 32820061
    51 6xij:j (8.0) BS01 rna ? GO:0000027 ... P60438 32820061
    52 6xij:k (8.0) BS01 rna ? GO:0000027 ... P0A7N9 32820061
    53 6xij:l (8.0) BS01 rna ? GO:0001070 ... P60723 32820061
    54 6xij:m (8.0) BS01 rna ? GO:0002181 ... P0A7P5 32820061
    55 6xij:n (8.0) BS01 rna ? GO:0000027 ... P62399 32820061
    56 6xij:n (8.0) BS02 rna ? GO:0000027 ... P62399 32820061
    57 6xij:o (8.0) BS01 rna ? GO:0002181 ... P0A7Q1 32820061
    58 6xij:p (8.0) BS01 rna ? GO:0000027 ... P0AG55 32820061
    59 6xij:q (8.0) BS01 rna ? GO:0002181 ... P0A7Q6 32820061
    60 6xij:r (8.0) BS01 rna ? GO:0002181 ... P0A7R1 32820061
    61 6xij:s (8.0) BS01 rna ? GO:0002181 ... P0AA10 32820061
    62 6xij:t (8.0) BS01 rna ? GO:0002181 ... P0ADY3 32820061
    63 6xij:t (8.0) BS02 rna ? GO:0002181 ... P0ADY3 32820061
    64 6xij:u (8.0) BS01 rna ? GO:0002181 ... P02413 32820061
    65 6xij:v (8.0) BS01 rna ? GO:0000027 ... P0ADY7 32820061
    66 6xij:v (8.0) BS02 rna ? GO:0000027 ... P0ADY7 32820061
    67 6xij:w (8.0) BS01 rna ? GO:0000027 ... P0AG44 32820061
    68 6xij:x (8.0) BS01 rna ? GO:0002181 ... P0C018 32820061
    69 6xij:x (8.0) BS02 rna ? GO:0002181 ... P0C018 32820061
    70 6xij:y (8.0) BS01 rna ? GO:0000027 ... P0A7K6 32820061
    71 6xij:z (8.0) BS01 rna ? GO:0000027 ... P0A7L3 32820061
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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