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BioLiP Library
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1f28:A (1.9) BS01 UMP 2.1.1.45 GO:0004799 ... P13100 11358692
    2 1f28:A (1.9) BS02 F89 2.1.1.45 GO:0004799 ... P13100 11358692 MOAD: Ki=16nM
    PDBbind: -logKd/Ki=7.80, Ki=16nM
    3 1f28:A (1.9) BS03 UMP 2.1.1.45 GO:0004799 ... P13100 11358692
    4 1f28:B (1.9) BS01 UMP 2.1.1.45 GO:0004799 ... P13100 11358692
    5 1f28:B (1.9) BS02 UMP 2.1.1.45 GO:0004799 ... P13100 11358692
    6 1f28:B (1.9) BS03 F89 2.1.1.45 GO:0004799 ... P13100 11358692 MOAD: Ki=16nM
    PDBbind: -logKd/Ki=7.80, Ki=16nM
    7 1f28:C (1.9) BS01 UMP 2.1.1.45 GO:0004799 ... P13100 11358692
    8 1f28:C (1.9) BS02 F89 2.1.1.45 GO:0004799 ... P13100 11358692 MOAD: Ki=16nM
    9 1f28:C (1.9) BS03 UMP 2.1.1.45 GO:0004799 ... P13100 11358692
    10 1f28:D (1.9) BS01 UMP 2.1.1.45 GO:0004799 ... P13100 11358692
    11 1f28:D (1.9) BS02 UMP 2.1.1.45 GO:0004799 ... P13100 11358692
    12 1f28:D (1.9) BS03 F89 2.1.1.45 GO:0004799 ... P13100 11358692 MOAD: Ki=16nM
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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