Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●D-I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●D-QUARK ●DRfold ●DRfold2 ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred ●TCRfinder

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●DeepMSA2 ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP Library
Download all results in tab-seperated text for 315 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 4xwt:A (2.003) BS04 U5P 3.1.-.- GO:0003723 ... H9CZL7 25940620
    202 4xwt:B (2.003) BS04 U5P 3.1.-.- GO:0003723 ... H9CZL7 25940620
    203 5cl0:A (2.22) BS03 U5P 3.1.-.- GO:0003723 ... C3W5S0 26976575
    204 5d00:B (2.15) BS02 U5P 2.4.1.- GO:0000166 ... P42982 27454321
    205 5d4g:A (2.08) BS03 U5P 3.1.-.- GO:0003723 ... C3W5S0 26976575
    206 5deb:A (2.14) BS02 U5P 3.1.-.- GO:0003723 ... C3W5S0 26976575
    207 5km3:A (1.2) BS01 U5P 3.4.22.-
    3.9.1.-    		 GO:0000118 ... P49773 28968488 PDBbind: -logKd/Ki=4.60, Kd=24.9uM
    208 5m79:A (1.3) BS02 U5P 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 N/A
    209 5m7a:A (1.304) BS01 U5P 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 N/A
    210 5mkn:A (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    211 5mkn:B (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    212 5mkn:C (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    213 5mkn:D (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    214 5mkn:E (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    215 5mkn:F (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    216 5mkn:F (2.55) BS02 U5P ? GO:0003723 ... A6UPF5 N/A
    217 5mkn:G (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    218 5mkn:G (2.55) BS02 U5P ? GO:0003723 ... A6UPF5 N/A
    219 5mkn:H (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    220 5mkn:I (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    221 5mkn:J (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    222 5mkn:K (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    223 5mkn:L (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    224 5mkn:M (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    225 5mkn:M (2.55) BS02 U5P ? GO:0003723 ... A6UPF5 N/A
    226 5mkn:N (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    227 5mkn:O (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    228 5mkn:P (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    229 5mkn:Q (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    230 5mkn:R (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    231 5mkn:T (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    232 5mkn:U (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    233 5mkn:U (2.55) BS02 U5P ? GO:0003723 ... A6UPF5 N/A
    234 5mkn:V (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    235 5mkn:W (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    236 5mkn:X (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    237 5mkn:Y (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    238 5mkn:Z (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    239 5mkn:a (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    240 5mkn:b (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    241 5mkn:d (2.55) BS01 U5P ? GO:0003723 ... A6UPF5 N/A
    242 5sul:B (3.3) BS01 U5P 2.4.1.11 GO:0004373 ... P27472 27935293
    243 5v1m:A (1.47) BS01 U5P 4.6.1.- GO:0004518 ... Q9BQ65 28887445
    244 6a4f:A (2.21) BS01 U5P 3.1.15.- GO:0000175 ... Q47VZ4 30804410
    245 6a4f:A (2.21) BS02 U5P 3.1.15.- GO:0000175 ... Q47VZ4 30804410
    246 6a4f:A (2.21) BS03 U5P 3.1.15.- GO:0000175 ... Q47VZ4 30804410
    247 6a4f:B (2.21) BS01 U5P 3.1.15.- GO:0000175 ... Q47VZ4 30804410
    248 6a4f:B (2.21) BS02 U5P 3.1.15.- GO:0000175 ... Q47VZ4 30804410
    249 6a4f:B (2.21) BS03 U5P 3.1.15.- GO:0000175 ... Q47VZ4 30804410
    250 6dsr:A (2.597) BS01 U5P 4.1.1.23 GO:0004590 ... Q8T6J6 30279319
    251 6dsr:A (2.597) BS02 U5P 4.1.1.23 GO:0004590 ... Q8T6J6 30279319
    252 6dsr:B (2.597) BS01 U5P 4.1.1.23 GO:0004590 ... Q8T6J6 30279319
    253 6dsr:B (2.597) BS02 U5P 4.1.1.23 GO:0004590 ... Q8T6J6 30279319
    254 6dss:A (2.599) BS01 U5P 4.1.1.23 GO:0004590 ... Q8T6J6 30279319
    255 6dss:A (2.599) BS02 U5P 4.1.1.23 GO:0004590 ... Q8T6J6 30279319
    256 6dss:B (2.599) BS01 U5P 4.1.1.23 GO:0004590 ... Q8T6J6 30279319
    257 6dss:B (2.599) BS02 U5P 4.1.1.23 GO:0004590 ... Q8T6J6 30279319
    258 6j5t:A (3.4) BS01 U5P 2.7.11.1 GO:0004672 ... O49839 30948527
    259 6j5t:B (3.4) BS01 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948527
    260 6j5t:B (3.4) BS02 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948527
    261 6j5t:D (3.4) BS01 U5P 2.7.11.1 GO:0004672 ... O49839 30948527
    262 6j5t:E (3.4) BS01 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948527
    263 6j5t:E (3.4) BS02 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948527
    264 6j5t:H (3.4) BS01 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948527
    265 6j5t:H (3.4) BS02 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948527
    266 6j5t:I (3.4) BS01 U5P 2.7.11.1 GO:0004672 ... O49839 30948527
    267 6j5t:J (3.4) BS01 U5P 2.7.11.1 GO:0004672 ... O49839 30948527
    268 6j5t:K (3.4) BS01 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948527
    269 6j5t:K (3.4) BS02 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948527
    270 6j5t:M (3.4) BS01 U5P 2.7.11.1 GO:0004672 ... O49839 30948527
    271 6j5t:N (3.4) BS01 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948527
    272 6j5t:N (3.4) BS02 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948527
    273 6j5u:B (3.9) BS01 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948526
    274 6j5u:B (3.9) BS02 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948526
    275 6j5u:C (3.9) BS01 U5P 2.7.11.1 GO:0004672 ... O49839 30948526
    276 6j5v:B (4.25) BS01 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948526
    277 6j5v:B (4.25) BS02 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948526
    278 6j5v:C (4.25) BS01 U5P 2.7.11.1 GO:0004672 ... O49839 30948526
    279 6j6i:A (3.7) BS01 U5P 2.7.11.1 GO:0004672 ... O49839 30948527
    280 6j6i:B (3.7) BS01 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948527
    281 6j6i:B (3.7) BS02 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948527
    282 6pgl:A (1.845) BS01 U5P ? GO:0004518 ... W0TCJ5 31832688
    283 6pgl:B (1.845) BS01 U5P ? GO:0004518 ... W0TCJ5 31832688
    284 6pgl:C (1.845) BS01 U5P ? GO:0004518 ... W0TCJ5 31832688
    285 6wlc:A (1.82) BS01 U5P 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33564093
    286 6wlc:B (1.82) BS01 U5P 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33564093
    287 6ypo:A (1.67) BS01 U5P 2.1.3.2 GO:0004070 ... P49077 33574254
    288 6ypo:B (1.67) BS01 U5P 2.1.3.2 GO:0004070 ... P49077 33574254
    289 6ywj:A (2.4) BS01 U5P 2.1.3.2 GO:0004070 ... P49077 33574254
    290 6ywj:B (2.4) BS01 U5P 2.1.3.2 GO:0004070 ... P49077 33574254
    291 6ywu:A (1.1) BS01 U5P 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    292 6zwy:A (1.0) BS01 U5P 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    293 7asq:A (0.95) BS01 U5P 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 N/A
    294 7k0r:A (3.3) BS01 U5P 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33504779
    295 7k0r:B (3.3) BS01 U5P 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33504779
    296 7k0r:C (3.3) BS01 U5P 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33504779
    297 7k0r:D (3.3) BS01 U5P 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33504779
    298 7k0r:E (3.3) BS01 U5P 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33504779
    299 7k0r:F (3.3) BS01 U5P 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33504779
    300 7tuv:A (2.225) BS02 U5P ? GO:0003723 ... Q95Z12 36583334
    301 8cso:A (2.6) BS01 U5P 4.1.1.23 GO:0004590 ... A0A0H3GNE4 N/A
    302 8cso:A (2.6) BS02 U5P 4.1.1.23 GO:0004590 ... A0A0H3GNE4 N/A
    303 8cso:B (2.6) BS01 U5P 4.1.1.23 GO:0004590 ... A0A0H3GNE4 N/A
    304 8cso:B (2.6) BS02 U5P 4.1.1.23 GO:0004590 ... A0A0H3GNE4 N/A
    305 8cso:C (2.6) BS01 U5P 4.1.1.23 GO:0004590 ... A0A0H3GNE4 N/A
    306 8cso:D (2.6) BS01 U5P 4.1.1.23 GO:0004590 ... A0A0H3GNE4 N/A
    307 8cso:E (2.6) BS01 U5P 4.1.1.23 GO:0004590 ... A0A0H3GNE4 N/A
    308 8cso:F (2.6) BS01 U5P 4.1.1.23 GO:0004590 ... A0A0H3GNE4 N/A
    309 8dg5:A (3.26) BS03 U5P 3.1.26.3 GO:0003676 ... Q9VCU9 36182693
    310 8dg7:A (3.32) BS05 U5P 3.1.26.3 GO:0003676 ... Q9VCU9 36182693
    311 8dga:A (3.73) BS03 U5P 3.1.26.3 GO:0003676 ... Q9VCU9 36182693
    312 8hcf:B (1.6) BS01 U5P 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    313 8jkr:A (2.0) BS01 U5P 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    314 8qjp:A (1.2) BS04 U5P N/A N/A N/A N/A
    315 8qjp:B (1.2) BS04 U5P N/A N/A N/A N/A
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417