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BioLiP Library
Download all results in tab-seperated text for 168 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1axm:A (3.0) BS02 SGN ? GO:0008083 ... P05230 9655399
    2 1axm:B (3.0) BS01 SGN ? GO:0008083 ... P05230 9655399
    3 1axm:B (3.0) BS03 SGN ? GO:0008083 ... P05230 9655399
    4 1axm:C (3.0) BS01 SGN ? GO:0008083 ... P05230 9655399
    5 1axm:C (3.0) BS03 SGN ? GO:0008083 ... P05230 9655399
    6 1axm:E (3.0) BS02 SGN ? GO:0008083 ... P05230 9655399
    7 1axm:F (3.0) BS02 SGN ? GO:0008083 ... P05230 9655399
    8 1bfb:A (1.9) BS02 SGN ? GO:0008083 ... P09038 8599088
    9 1bfc:A (2.2) BS01 SGN ? GO:0008083 ... P09038 8599088
    10 1bfc:A (2.2) BS03 SGN ? GO:0008083 ... P09038 8599088
    11 1e0o:A (2.8) BS01 SGN ? GO:0001525 ... P05230 11069186
    12 1e0o:A (2.8) BS03 SGN ? GO:0001525 ... P05230 11069186
    13 1e0o:B (2.8) BS01 SGN 2.7.10.1 N/A P21802 11069186
    14 1e0o:C (2.8) BS01 SGN ? GO:0001525 ... P05230 11069186
    15 1fq9:A (3.0) BS01 SGN ? GO:0008083 ... P09038 11030354
    16 1fq9:A (3.0) BS03 SGN ? GO:0008083 ... P09038 11030354
    17 1fq9:B (3.0) BS01 SGN ? GO:0008083 ... P09038 11030354
    18 1fq9:B (3.0) BS03 SGN ? GO:0008083 ... P09038 11030354
    19 1fq9:C (3.0) BS01 SGN 2.7.10.1 N/A P11362 11030354
    20 1fq9:D (3.0) BS02 SGN 2.7.10.1 N/A P11362 11030354
    21 1g5n:A (1.9) BS01 SGN ? GO:0001786 ... P14668 11342135
    22 1g5n:A (1.9) BS03 SGN ? GO:0001786 ... P14668 11342135
    23 1g5n:A (1.9) BS05 SGN ? GO:0001786 ... P14668 11342135
    24 1gmn:A (2.3) BS01 SGN ? N/A P14210 11597998
    25 1gmn:A (2.3) BS03 SGN ? N/A P14210 11597998
    26 1gmo:B (3.0) BS02 SGN ? N/A P14210 11597998
    27 1gmo:B (3.0) BS03 SGN ? N/A P14210 11597998
    28 1gmo:B (3.0) BS04 SGN ? N/A P14210 11597998
    29 1gmo:C (3.0) BS01 SGN ? N/A P14210 11597998
    30 1gmo:F (3.0) BS01 SGN ? N/A P14210 11597998
    31 1gmo:F (3.0) BS02 SGN ? N/A P14210 11597998
    32 1gmo:F (3.0) BS03 SGN ? N/A P14210 11597998
    33 1gmo:G (3.0) BS01 SGN ? N/A P14210 11597998
    34 1gmo:H (3.0) BS01 SGN ? N/A P14210 11597998
    35 1gmo:H (3.0) BS02 SGN ? N/A P14210 11597998
    36 1t8u:B (1.95) BS01 SGN 2.8.2.30 GO:0008146 ... Q9Y663 15304505
    37 1t8u:B (1.95) BS03 SGN 2.8.2.30 GO:0008146 ... Q9Y663 15304505
    38 1u4l:A (2.0) BS01 SGN ? GO:0002407 ... P13501 15530372
    39 1xmn:D (1.85) BS01 SGN 3.4.21.5 GO:0004252 ... P00734 15548541
    40 1xmn:F (1.85) BS02 SGN 3.4.21.5 GO:0004252 ... P00734 15548541
    41 1xmn:H (1.85) BS01 SGN 3.4.21.5 GO:0004252 ... P00734 15548541
    42 2axm:A (3.0) BS02 SGN ? GO:0008083 ... P05230 9655399
    43 2axm:B (3.0) BS01 SGN ? GO:0008083 ... P05230 9655399
    44 2axm:B (3.0) BS03 SGN ? GO:0008083 ... P05230 9655399
    45 2axm:B (3.0) BS05 SGN ? GO:0008083 ... P05230 9655399
    46 2brs:B (2.2) BS01 SGN ? GO:0006955 ... P13727 16245931
    47 2fut:A (2.3) BS01 SGN 4.2.2.7
    4.2.2.8    		 GO:0016829 ... C6XZB6 16565082
    48 2fut:B (2.3) BS01 SGN 4.2.2.7
    4.2.2.8    		 GO:0016829 ... C6XZB6 16565082
    49 2gd4:C (3.3) BS04 SGN ? GO:0004867 ... P01008 16619025
    50 2gd4:I (3.3) BS04 SGN ? GO:0004867 ... P01008 16619025
    51 2hyu:A (1.86) BS01 SGN ? GO:0001525 ... P07355 16882661
    52 2hyv:A (1.42) BS01 SGN ? GO:0001525 ... P07355 16882661
    53 2lvz:A (-1.00) BS02 SGN 3.1.27.- GO:0001530 ... P12724 23025322
    54 2nwg:A (2.07) BS01 SGN ? GO:0001666 ... P48061 17264079
    55 2nwg:A (2.07) BS03 SGN ? GO:0001666 ... P48061 17264079
    56 2nwg:B (2.07) BS01 SGN ? GO:0001666 ... P48061 17264079
    57 2nwg:B (2.07) BS02 SGN ? GO:0001666 ... P48061 17264079
    58 2vra:B (3.2) BS02 SGN ? N/A O44924 18359766
    59 2wnu:F (2.3) BS01 SGN ? N/A P02747 20548024
    60 3b9f:H (1.6) BS01 SGN 3.4.21.5 GO:0004252 ... P00734 18362344
    61 3evj:I (3.0) BS04 SGN ? GO:0002020 ... P01008 19452598
    62 3ilr:A (1.5) BS02 SGN 4.2.2.7 GO:0016829 ... Q89YQ6 19801541
    63 3ilr:A (1.5) BS03 SGN 4.2.2.7 GO:0016829 ... Q89YQ6 19801541
    64 3in9:A (2.0) BS01 SGN ? GO:0016829 ... Q89YQ6 19801541
    65 3in9:A (2.0) BS03 SGN ? GO:0016829 ... Q89YQ6 19801541
    66 3ina:A (1.9) BS01 SGN ? GO:0016829 ... Q89YQ6 19801541
    67 3ina:A (1.9) BS03 SGN ? GO:0016829 ... Q89YQ6 19801541
    68 3ina:A (1.9) BS07 SGN ? GO:0016829 ... Q89YQ6 19801541
    69 3mkp:A (2.81) BS01 SGN ? N/A P14210 N/A
    70 3mkp:C (2.81) BS01 SGN ? N/A P14210 N/A
    71 3ogx:C (2.8) BS01 SGN ? GO:0001818 ... Q9GK12 22509483
    72 3ojv:A (2.6) BS01 SGN ? GO:0008083 ... P05230 22057274
    73 3ojv:A (2.6) BS03 SGN ? GO:0008083 ... P05230 22057274
    74 3ojv:B (2.6) BS01 SGN ? GO:0008083 ... P05230 22057274
    75 3ojv:B (2.6) BS03 SGN ? GO:0008083 ... P05230 22057274
    76 3qmk:A (2.21) BS01 SGN ? GO:0016020 ... P51693 21930949 PDBbind: -logKd/Ki=6.10, Kd=0.787uM
    77 3qmk:A (2.21) BS03 SGN ? GO:0016020 ... P51693 21930949 PDBbind: -logKd/Ki=6.10, Kd=0.787uM
    78 3uan:A (1.844) BS01 SGN 2.8.2.23 GO:0005794 ... O35310 22431632
    79 3uan:A (1.844) BS03 SGN 2.8.2.23 GO:0005794 ... O35310 22431632
    80 3uan:B (1.844) BS01 SGN 2.8.2.23 GO:0005794 ... O35310 22431632
    81 3uan:B (1.844) BS03 SGN 2.8.2.23 GO:0005794 ... O35310 22431632
    82 3ud9:B (2.34) BS02 SGN ? GO:0001525 ... P05230 23240683 PDBbind: -logKd/Ki=4.67, Kd=21.2uM
    83 4ak2:A (1.35) BS01 SGN ? N/A Q89YS0 28630303
    84 4ak2:A (1.35) BS04 SGN ? N/A Q89YS0 28630303
    85 4c4n:A (2.36) BS02 SGN 3.1.-.- GO:0007267 ... Q62226 24062467 PDBbind: -logKd/Ki=6.10, Kd=0.8uM
    86 4c4n:B (2.36) BS01 SGN 3.1.-.- GO:0007267 ... Q62226 24062467
    87 4oef:A (1.8) BS02 SGN ? GO:0008083 ... P09038 24959968 PDBbind: -logKd/Ki=4.76, Kd=17.5uM
    88 4pxq:A (2.2) BS01 SGN 5.1.3.17 GO:0000139 ... F1QR43 25568314
    89 4pxq:A (2.2) BS02 SGN 5.1.3.17 GO:0000139 ... F1QR43 25568314
    90 4pxq:A (2.2) BS04 SGN 5.1.3.17 GO:0000139 ... F1QR43 25568314
    91 4pxq:B (2.2) BS01 SGN 5.1.3.17 GO:0000139 ... F1QR43 25568314
    92 4pxq:B (2.2) BS02 SGN 5.1.3.17 GO:0000139 ... F1QR43 25568314
    93 4pxq:B (2.2) BS04 SGN 5.1.3.17 GO:0000139 ... F1QR43 25568314
    94 4qfj:A (2.196) BS01 SGN ? GO:0003676 ... Q5WRG2 N/A
    95 4rda:A (2.497) BS01 SGN ? GO:0016020 ... P51693 25760599
    96 4rda:A (2.497) BS03 SGN ? GO:0016020 ... P51693 25760599
    97 4rda:B (2.497) BS01 SGN ? GO:0016020 ... P51693 25760599
    98 4rda:B (2.497) BS02 SGN ? GO:0016020 ... P51693 25760599
    99 4rda:B (2.497) BS03 SGN ? GO:0016020 ... P51693 25760599
    100 4uyw:A (1.7) BS01 SGN 3.1.1.98 GO:0016787 ... Q6P988 25731175
    101 4x7r:A (2.15) BS04 SGN 2.4.1.70 GO:0005737 ... A0A0H2WWV6 25624472
    102 4x7r:B (2.15) BS03 SGN 2.4.1.70 GO:0005737 ... A0A0H2WWV6 25624472
    103 5buo:A (2.31) BS02 SGN ? GO:0016020 ... P05067 N/A
    104 5d65:B (3.1) BS02 SGN ? GO:0005576 ... P10147 27091995
    105 5dnf:D (2.549) BS01 SGN ? GO:0002407 ... P13501 27091995
    106 5e9b:A (1.88) BS02 SGN 3.2.1.166 GO:0016020 ... Q9Y251 26575439
    107 5e9b:B (1.88) BS02 SGN 3.2.1.166 N/A Q9Y251 26575439
    108 5e9c:A (1.73) BS03 SGN 3.2.1.166 GO:0016020 ... Q9Y251 26575439
    109 5g2t:B (1.9) BS01 SGN 3.1.6.- GO:0004065 ... Q8A7C8 28630303
    110 5g2v:A (1.39) BS02 SGN 3.1.6.- GO:0016787 ... Q89YS5 28630303
    111 5g6u:A (1.844) BS02 SGN ? N/A Q9UJ71 29272097 MOAD: ic50=0.22uM
    112 5g6u:B (1.844) BS02 SGN ? N/A Q9UJ71 29272097 MOAD: ic50=0.22uM
    113 5g6u:C (1.844) BS01 SGN ? N/A Q9UJ71 29272097 MOAD: ic50=0.22uM
    114 5g6u:D (1.844) BS03 SGN ? N/A Q9UJ71 29272097 MOAD: ic50=0.22uM
    115 5ue2:A (-1.00) BS01 SGN 3.4.24.23 GO:0002779 ... P09237 28648610
    116 5ue5:A (-1.00) BS01 SGN 3.4.24.23 GO:0002779 ... P09237 28648610
    117 5ue5:A (-1.00) BS03 SGN 3.4.24.23 GO:0002779 ... P09237 28648610
    118 5wd7:A (3.1) BS05 SGN ? GO:0000166 ... G4RIN4 28724897
    119 6e32:A1 (3.4) BS01 SGN ? GO:0019062 ... Q805N7 30602608
    120 6e32:AN (3.4) BS01 SGN ? GO:0019062 ... Q805N7 30602608
    121 6e34:AA (3.6) BS01 SGN ? GO:0019062 ... Q805N7 30602608
    122 6e39:A1 (3.5) BS01 SGN ? GO:0019062 ... Q805N7 30602608
    123 6e39:A5 (3.5) BS01 SGN ? GO:0019062 ... Q805N7 30602608
    124 6lja:A (1.978) BS01 SGN ? GO:0016829 ... B3C5J6 33627653
    125 6ljl:A (1.73) BS01 SGN ? GO:0016829 ... B3C5J6 33627653
    126 6ljl:A (1.73) BS03 SGN ? GO:0016829 ... B3C5J6 33627653
    127 6r0x:E (3.13) BS03 SGN ? GO:0016020 ... O95866 31436532 PDBbind: -logKd/Ki=8.70, Kd=2.00nM
    128 6r0x:F (3.13) BS01 SGN ? GO:0016020 ... O95866 31436532 PDBbind: -logKd/Ki=8.70, Kd=2.00nM
    129 6xkg:A (1.55) BS01 SGN 2.8.2.30 GO:0008146 ... Q9Y663 34458837
    130 6xkg:A (1.55) BS03 SGN 2.8.2.30 GO:0008146 ... Q9Y663 34458837
    131 6xkg:A (1.55) BS04 SGN 2.8.2.30 GO:0008146 ... Q9Y663 34458837
    132 6xkg:B (1.55) BS01 SGN 2.8.2.30 GO:0008146 ... Q9Y663 34458837
    133 6xkg:B (1.55) BS03 SGN 2.8.2.30 GO:0008146 ... Q9Y663 34458837
    134 6xkg:B (1.55) BS05 SGN 2.8.2.30 GO:0008146 ... Q9Y663 34458837
    135 7b8h:A (1.34) BS02 SGN 2.7.11.1 GO:0004672 ... P68400 33571828
    136 7b8h:A (1.34) BS03 SGN 2.7.11.1 GO:0004672 ... P68400 33571828
    137 7b8i:A (2.55) BS01 SGN 2.7.11.1 GO:0004672 ... P68400 33571828
    138 7b8i:B (2.55) BS01 SGN 2.7.11.1 GO:0004672 ... P68400 33571828
    139 7mo7:A (4.8) BS01 SGN ? GO:0004252 ... P14210 34210960
    140 7mo7:A (4.8) BS02 SGN ? GO:0004252 ... P14210 34210960
    141 7mo9:A (4.0) BS01 SGN ? GO:0004252 ... P14210 34210960
    142 7moa:A (4.9) BS01 SGN ? GO:0004252 ... P14210 34210960
    143 7moa:A (4.9) BS03 SGN ? GO:0004252 ... P14210 34210960
    144 7moa:A (4.9) BS05 SGN ? GO:0004252 ... P14210 34210960
    145 7moa:D (4.9) BS01 SGN ? GO:0004252 ... P14210 34210960
    146 7moa:D (4.9) BS03 SGN ? GO:0004252 ... P14210 34210960
    147 7moa:D (4.9) BS05 SGN ? GO:0004252 ... P14210 34210960
    148 7pgm:B (2.7) BS01 SGN ? N/A Q96QV1 34887403
    149 7scd:A (2.9) BS02 SGN 2.8.2.23 GO:0005515 ... P0AA25
    Q8IZT8    		 N/A
    150 7scd:A (2.9) BS04 SGN 2.8.2.23 GO:0005515 ... P0AA25
    Q8IZT8    		 N/A
    151 7sce:A (2.75) BS01 SGN 2.8.2.23 GO:0005515 ... P0AA25
    Q8IZT8    		 N/A
    152 7sce:A (2.75) BS02 SGN 2.8.2.23 GO:0005515 ... P0AA25
    Q8IZT8    		 N/A
    153 7sce:A (2.75) BS04 SGN 2.8.2.23 GO:0005515 ... P0AA25
    Q8IZT8    		 N/A
    154 7ysh:B (2.74) BS01 SGN ? GO:0000165 ... Q9GZV9 37286607
    155 7ysh:D (2.74) BS01 SGN 2.7.10.1 N/A P11362 37286607
    156 7ysh:E (2.74) BS02 SGN 2.7.10.1 N/A P11362 37286607
    157 7ysu:B (3.2) BS01 SGN ? GO:0008083 ... Q9GZV9 37286607
    158 7ysu:C (3.2) BS02 SGN 2.7.10.1 N/A P22607 37286607
    159 7ysu:E (3.2) BS01 SGN 2.7.10.1 N/A P22607 37286607
    160 7ysu:E (3.2) BS02 SGN 2.7.10.1 N/A P22607 37286607
    161 7ysu:E (3.2) BS04 SGN 2.7.10.1 N/A P22607 37286607
    162 7ysw:B (3.03) BS01 SGN ? GO:0008083 ... Q9GZV9 37286607
    163 7ysw:C (3.03) BS02 SGN 2.7.10.1 N/A P22455 37286607
    164 7ysw:E (3.03) BS01 SGN 2.7.10.1 N/A P22455 37286607
    165 7ysw:E (3.03) BS02 SGN 2.7.10.1 N/A P22455 37286607
    166 7ysw:E (3.03) BS03 SGN 2.7.10.1 N/A P22455 37286607
    167 8edi:A (2.11) BS01 SGN ? N/A Q26261 38363837
    168 8edi:B (2.11) BS01 SGN ? N/A Q26261 38363837
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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