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BioLiP Library
Download all results in tab-seperated text for 41 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1oge:A (2.05) BS01 RP5 5.4.99.62 GO:0005737 ... P36946 12738765
    2 1oge:B (2.05) BS01 RP5 5.4.99.62 GO:0005737 ... P36946 12738765
    3 1oge:C (2.05) BS01 RP5 5.4.99.62 GO:0005737 ... P36946 12738765
    4 1oge:D (2.05) BS01 RP5 5.4.99.62 GO:0005737 ... P36946 12738765
    5 1oge:E (2.05) BS01 RP5 5.4.99.62 GO:0005737 ... P36946 12738765
    6 1qvj:A (1.91) BS01 RP5 3.6.1.13 GO:0047631 ... Q9BW91 12948489
    7 2c37:N (2.8) BS01 RP5 3.1.13.- GO:0000175 ... Q9UXC2 16285928
    8 2nx1:A (1.8) BS01 RP5 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=0.02uM
    9 2nx1:B (1.8) BS01 RP5 2.5.1.55 GO:0005737 ... O66496 17381075 MOAD: Kd=0.02uM
    10 2obc:A (3.0) BS01 RP5 1.1.1.193
    3.5.4.26    		 GO:0003824 ... P25539 17765262
    11 2r5n:A (1.6) BS04 RP5 2.2.1.1 GO:0000287 ... P27302 17914867
    12 2r5n:A (1.6) BS06 RP5 2.2.1.1 GO:0000287 ... P27302 17914867
    13 2r5n:B (1.6) BS04 RP5 2.2.1.1 GO:0000287 ... P27302 17914867
    14 2r5n:B (1.6) BS06 RP5 2.2.1.1 GO:0000287 ... P27302 17914867
    15 3m7i:A (1.75) BS03 RP5 2.2.1.1 GO:0003824 ... Q0P7Y3 N/A
    16 3upt:A (2.4) BS03 RP5 2.2.1.1 GO:0003824 ... Q2SZA7 23382856
    17 3upt:A (2.4) BS04 RP5 2.2.1.1 GO:0003824 ... Q2SZA7 23382856
    18 3upt:B (2.4) BS02 RP5 2.2.1.1 GO:0003824 ... Q2SZA7 23382856
    19 3upt:B (2.4) BS03 RP5 2.2.1.1 GO:0003824 ... Q2SZA7 23382856
    20 4z7j:A (1.502) BS02 RP5 N/A GO:0006189 ... N/A N/A
    21 5aju:A (2.5) BS01 RP5 ? GO:0005829 ... M1VUY5 26010010
    22 5ebe:B (3.0) BS03 RP5 3.1.4.-
    3.6.1.15    		 GO:0004767 ... Q92484 26783088
    23 5lnw:A (1.9) BS02 RP5 4.3.3.6 GO:0005515 ... Q8L940 28092359
    24 5lnw:B (1.9) BS02 RP5 4.3.3.6 GO:0005515 ... Q8L940 28092359
    25 5lnw:C (1.9) BS02 RP5 4.3.3.6 GO:0005515 ... Q8L940 28092359
    26 5lnw:D (1.9) BS02 RP5 4.3.3.6 GO:0005515 ... Q8L940 28092359
    27 7xey:A (2.29) BS02 RP5 ? GO:0000304 ... Q9SU72 35857645
    28 7xey:B (2.29) BS02 RP5 2.3.1.- GO:0001666 ... Q9S745 35857645
    29 8k06:B (1.845) BS01 RP5 4.2.1.70 GO:0001522 ... Q84K35 38117089
    30 8sr7:A (1.97) BS01 RP5 ? GO:0005216 ... F2UB89 38773335
    31 8sr7:B (1.97) BS02 RP5 ? GO:0005216 ... F2UB89 38773335
    32 8sr7:C (1.97) BS02 RP5 ? GO:0005216 ... F2UB89 38773335
    33 8sr7:D (1.97) BS04 RP5 ? GO:0005216 ... F2UB89 38773335
    34 8srf:A (2.52) BS01 RP5 ? GO:0005216 ... F2UB89 N/A
    35 8srf:B (2.52) BS02 RP5 ? GO:0005216 ... F2UB89 N/A
    36 8srf:C (2.52) BS02 RP5 ? GO:0005216 ... F2UB89 N/A
    37 8srf:D (2.52) BS04 RP5 ? GO:0005216 ... F2UB89 N/A
    38 8srg:A (3.03) BS01 RP5 ? GO:0005216 ... F2UB89 N/A
    39 8srg:B (3.03) BS02 RP5 ? GO:0005216 ... F2UB89 N/A
    40 8srg:C (3.03) BS02 RP5 ? GO:0005216 ... F2UB89 N/A
    41 8srg:D (3.03) BS04 RP5 ? GO:0005216 ... F2UB89 N/A
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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