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BioLiP Library
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3fl8:A (2.2881) BS02 RAR 1.5.1.3 GO:0000166 ... Q81R22 19364848 MOAD: ic50=54nM
    PDBbind: -logKd/Ki=7.27, IC50=54nM
    BindingDB: IC50=54nM
    2 3fl8:B (2.2881) BS02 RAR 1.5.1.3 GO:0000166 ... Q81R22 19364848 MOAD: ic50=54nM
    BindingDB: IC50=54nM
    3 3fl8:C (2.2881) BS02 RAR 1.5.1.3 GO:0000166 ... Q81R22 19364848 MOAD: ic50=54nM
    BindingDB: IC50=54nM
    4 3fl8:D (2.2881) BS02 RAR 1.5.1.3 GO:0000166 ... Q81R22 19364848 MOAD: ic50=54nM
    BindingDB: IC50=54nM
    5 3fl8:E (2.2881) BS02 RAR 1.5.1.3 GO:0000166 ... Q81R22 19364848 MOAD: ic50=54nM
    BindingDB: IC50=54nM
    6 3fl8:F (2.2881) BS02 RAR 1.5.1.3 GO:0000166 ... Q81R22 19364848 MOAD: ic50=54nM
    BindingDB: IC50=54nM
    7 3fl8:G (2.2881) BS02 RAR 1.5.1.3 GO:0000166 ... Q81R22 19364848 MOAD: ic50=54nM
    BindingDB: IC50=54nM
    8 3fl8:H (2.2881) BS02 RAR 1.5.1.3 GO:0000166 ... Q81R22 19364848 MOAD: ic50=54nM
    BindingDB: IC50=54nM
    9 3m08:A (2.014) BS01 RAR 1.5.1.3 GO:0004146 ... P0A017 20606069 MOAD: Ki=2.8nM
    BindingDB: IC50=12.5nM, Ki=0.9nM
    10 3m09:A (2.009) BS01 RAR 1.5.1.3 GO:0004146 ... P0A017 20606069 MOAD: Ki=0.9nM
    BindingDB: IC50=12.5nM, Ki=0.9nM
    11 4m7v:A (2.3) BS01 RAR 1.5.1.3 GO:0000166 ... Q834R2 24495113 MOAD: Ki=4.5nM
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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