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BioLiP Library
Download all results in tab-seperated text for 6 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1g3m:A (1.7) BS02 PCQ 2.8.2.4 GO:0004062 ... P49888 12782487 MOAD: ic50~0.15nM
    2 1g3m:B (1.7) BS02 PCQ 2.8.2.4 GO:0004062 ... P49888 12782487 MOAD: ic50~0.15nM
    PDBbind: -logKd/Ki=10.00, IC50=0.10nM
    3 2g5u:A (1.8) BS01 PCQ ? GO:0005179 ... P02766 15610856 MOAD: Kd=3.2nM
    PDBbind: -logKd/Ki=8.49, Kd=3.2nM
    4 2g5u:B (1.8) BS01 PCQ ? GO:0005179 ... P02766 15610856 MOAD: Kd=3.2nM
    PDBbind: -logKd/Ki=8.49, Kd=3.2nM
    5 4mas:A (1.22) BS01 PCQ ? GO:0005179 ... P02766 N/A
    6 4mas:B (1.22) BS01 PCQ ? GO:0005179 ... P02766 N/A
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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