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BioLiP Library
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6pn1:A (2.196) BS03 OSG 1.14.13.39 GO:0004517 ... P29476 32302123 MOAD: Ki=0.072uM
    BindingDB: Ki=72nM
    2 6pn1:B (2.196) BS04 OSG 1.14.13.39 GO:0004517 ... P29476 32302123 MOAD: Ki=0.072uM
    BindingDB: Ki=72nM
    3 6png:A (1.775) BS02 OSG 1.14.13.39 GO:0004517 ... P29475 32302123 MOAD: Ki=0.058uM
    BindingDB: Ki=58nM
    4 6png:A (1.775) BS03 OSG 1.14.13.39 GO:0004517 ... P29475 32302123 MOAD: Ki=0.058uM
    BindingDB: Ki=58nM
    5 6png:A (1.775) BS04 OSG 1.14.13.39 GO:0004517 ... P29475 32302123 MOAD: Ki=0.058uM
    BindingDB: Ki=58nM
    6 6png:B (1.775) BS01 OSG 1.14.13.39 GO:0004517 ... P29475 32302123 MOAD: Ki=0.058uM
    BindingDB: Ki=58nM
    7 6png:B (1.775) BS02 OSG 1.14.13.39 GO:0004517 ... P29475 32302123 MOAD: Ki=0.058uM
    BindingDB: Ki=58nM
    8 6png:B (1.775) BS05 OSG 1.14.13.39 GO:0004517 ... P29475 32302123 MOAD: Ki=0.058uM
    BindingDB: Ki=58nM
    9 6poy:A (2.3) BS03 OSG 1.14.13.39 GO:0004517 ... P29474 32302123 MOAD: Ki=12.9uM
    BindingDB: Ki=12900nM
    10 6poy:B (2.3) BS04 OSG 1.14.13.39 GO:0004517 ... P29474 32302123 MOAD: Ki=12.9uM
    BindingDB: Ki=12900nM
    11 6poy:C (2.3) BS03 OSG 1.14.13.39 GO:0004517 ... P29474 32302123 MOAD: Ki=12.9uM
    BindingDB: Ki=12900nM
    12 6poy:D (2.3) BS05 OSG 1.14.13.39 GO:0004517 ... P29474 32302123 MOAD: Ki=12.9uM
    BindingDB: Ki=12900nM
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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