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BioLiP Library
Download all results in tab-seperated text for 9 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5fqb:A (1.899) BS03 OK3 3.5.2.6 GO:0008270 ... P04190 27499424 MOAD: ic50=0.3uM
    PDBbind: -logKd/Ki=6.52, IC50=0.3uM
    2 5fqc:A (1.449) BS03 OK3 3.5.2.6 GO:0016787 ... Q9K2N0 27499424 MOAD: ic50=0.003uM
    PDBbind: -logKd/Ki=8.52, IC50=0.003uM
    3 5fqc:B (1.449) BS03 OK3 3.5.2.6 GO:0016787 ... Q9K2N0 27499424 MOAD: ic50=0.003uM
    4 5j8x:A (2.53) BS01 OK3 3.4.16.4
    3.5.2.6    		 GO:0000270 ... P0AEB2 27499424 PDBbind: -logKd/Ki=8.80, IC50=0.0016uM
    5 5ne1:B (2.09) BS01 OK3 3.5.2.6 GO:0008800 ... Q9RBQ1 28876489 PDBbind: -logKd/Ki=8.28, IC50=5.25nM
    6 6yeo:A (2.037) BS01 OK3 3.5.2.6 GO:0008800 ... P00811 32545682
    7 6yeo:B (2.037) BS01 OK3 3.5.2.6 GO:0008800 ... P00811 32545682
    8 6yeo:C (2.037) BS01 OK3 3.5.2.6 GO:0008800 ... P00811 32545682
    9 6yeo:D (2.037) BS01 OK3 3.5.2.6 GO:0008800 ... P00811 32545682
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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