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BioLiP Library
Download all results in tab-seperated text for 7 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5qr4:B (1.57) BS02 NUY 2.3.1.37 GO:0003870 ... P22557 N/A
    2 5qri:A (1.83) BS01 NUY ? GO:0000978 ... O15178 N/A
    3 5s58:D (2.3) BS02 NUY ? GO:0000226 ... Q6B856 33951246
    4 5s9v:A (1.9) BS02 NUY 1.8.1.12 GO:0000166 ... Q389T8 35860359
    5 5s9v:B (1.9) BS02 NUY 1.8.1.12 GO:0000166 ... Q389T8 35860359
    6 9f4h:A (1.4) BS01 NUY ? GO:0003676 ... P09651 N/A
    7 9f4h:A (1.4) BS02 NUY ? GO:0003676 ... P09651 N/A
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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