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BioLiP Library
Download all results in tab-seperated text for 45 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2b0q:A (2.7) BS01 NMY 2.7.1.95 GO:0005524 ... P0A3Y5 12006485
    2 5dv4:A (1.8) BS01 NMY 3.1.13.4 GO:0003824 ... Q96LI5 27013054 MOAD: ic50=3370uM
    PDBbind: -logKd/Ki=2.47, IC50=3370uM
    3 5iqe:A (2.5) BS02 NMY 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    4 5iqe:B (2.5) BS02 NMY 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    5 5iqe:C (2.5) BS02 NMY 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    6 5iqe:D (2.5) BS02 NMY 2.3.1.-
    2.7.1.190    		 N/A P0A0C1 27161980
    7 6mb5:A (2.2) BS01 NMY 2.3.1.81 GO:0008080 ... Q51405 30347146
    8 6mb9:A (2.5) BS02 NMY 2.3.1.81 GO:0008080 ... Q51405 30347146
    9 6mb9:B (2.5) BS02 NMY 2.3.1.81 GO:0008080 ... Q51405 30347146
    10 6mb9:C (2.5) BS02 NMY 2.3.1.81 GO:0008080 ... Q51405 30347146
    11 6mb9:D (2.5) BS03 NMY 2.3.1.81 GO:0008080 ... Q51405 30347146
    12 6nmk:A (1.94) BS01 NMY ? GO:0000166 ... Q57514 N/A
    13 6nmk:B (1.94) BS01 NMY ? GO:0000166 ... Q57514 N/A
    14 6nml:A (2.0) BS01 NMY ? GO:0000166 ... Q57514 N/A
    15 6nml:A (2.0) BS05 NMY ? GO:0000166 ... Q57514 N/A
    16 6nml:B (2.0) BS01 NMY ? GO:0000166 ... Q57514 N/A
    17 6nml:B (2.0) BS02 NMY ? GO:0000166 ... Q57514 N/A
    18 6nmm:A (2.5) BS01 NMY ? GO:0000166 ... Q57514 N/A
    19 6nmm:A (2.5) BS05 NMY ? GO:0000166 ... Q57514 N/A
    20 6nmm:B (2.5) BS01 NMY ? GO:0000166 ... Q57514 N/A
    21 6nmm:C (2.5) BS02 NMY ? GO:0000166 ... Q57514 N/A
    22 6nmm:C (2.5) BS06 NMY ? GO:0000166 ... Q57514 N/A
    23 6nmm:D (2.5) BS01 NMY ? GO:0000166 ... Q57514 N/A
    24 6nmn:A (1.8) BS01 NMY ? GO:0000166 ... Q57514 N/A
    25 6nmn:A (1.8) BS04 NMY ? GO:0000166 ... Q57514 N/A
    26 6nmn:B (1.8) BS02 NMY ? GO:0000166 ... Q57514 N/A
    27 6p04:A (2.3) BS01 NMY 2.7.7.- GO:0016740 ... P05058 N/A
    28 6p04:A (2.3) BS02 NMY 2.7.7.- GO:0016740 ... P05058 N/A
    29 6p04:B (2.3) BS01 NMY 2.7.7.- GO:0016740 ... P05058 N/A
    30 6p04:B (2.3) BS02 NMY 2.7.7.- GO:0016740 ... P05058 N/A
    31 6p06:A (2.3) BS01 NMY 2.7.7.- GO:0016740 ... P05058 N/A
    32 6p06:A (2.3) BS05 NMY 2.7.7.- GO:0016740 ... P05058 N/A
    33 6p06:B (2.3) BS01 NMY 2.7.7.- GO:0016740 ... P05058 N/A
    34 6p06:B (2.3) BS03 NMY 2.7.7.- GO:0016740 ... P05058 N/A
    35 6p08:A (2.27) BS01 NMY 2.7.7.- GO:0016740 ... P05058 N/A
    36 6p08:A (2.27) BS06 NMY 2.7.7.- GO:0016740 ... P05058 N/A
    37 6p08:D (2.27) BS01 NMY 2.7.7.- GO:0016740 ... P05058 N/A
    38 6p08:D (2.27) BS04 NMY 2.7.7.- GO:0016740 ... P05058 N/A
    39 6un8:A (1.65) BS01 NMY 2.7.7.- GO:0016740 ... P05057 N/A
    40 6un8:B (1.65) BS01 NMY 2.7.7.- GO:0016740 ... P05057 N/A
    41 6un8:B (1.65) BS02 NMY 2.7.7.- GO:0016740 ... P05057 N/A
    42 7cs1:A (1.966) BS01 NMY 2.3.1.- GO:0016746 ... P94968 33299080
    43 7cs1:B (1.966) BS01 NMY 2.3.1.- GO:0016746 ... P94968 33299080
    44 7q1x:A (1.45) BS01 NMY 2.3.1.81 GO:0008080 ... P29808 N/A
    45 7uun:A (2.83) BS01 NMY ? GO:0016740 ... A0A1D0AST6 37973888
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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