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BioLiP Library
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1pp9:A (2.1) BS01 JZR 1.10.2.2 GO:0005739 ... P31800 16024040
    2 1pp9:B (2.1) BS01 JZR 1.10.2.2 GO:0004222 ... P23004 16024040
    3 1pp9:F (2.1) BS01 JZR 1.10.2.2 GO:0005739 ... P00129 16024040
    4 1pp9:O (2.1) BS01 JZR 1.10.2.2 GO:0004222 ... P23004 16024040
    5 1pp9:P (2.1) BS01 JZR 1.10.2.2 GO:0005739 ... P00157 16024040
    6 1pp9:S (2.1) BS01 JZR 1.10.2.2 GO:0005739 ... P00129 16024040
    7 1ppj:A (2.1) BS01 JZR 1.10.2.2 GO:0005739 ... P31800 16024040
    8 1ppj:B (2.1) BS01 JZR 1.10.2.2 GO:0004222 ... P23004 16024040
    9 1ppj:C (2.1) BS01 JZR 1.10.2.2 GO:0005739 ... P00157 16024040
    10 1ppj:D (2.1) BS01 JZR 7.1.1.8 GO:0009055 ... P00125 16024040
    11 1ppj:F (2.1) BS01 JZR 1.10.2.2 GO:0005739 ... P00129 16024040
    12 1ppj:O (2.1) BS01 JZR 1.10.2.2 GO:0004222 ... P23004 16024040
    13 1ppj:S (2.1) BS01 JZR 1.10.2.2 GO:0005739 ... P00129 16024040
    14 1yq3:C (2.2) BS02 JZR 1.3.5.1 GO:0005739 ... D0VWW3 16371358
    15 1yq4:C (2.33) BS01 JZR 1.3.5.1 GO:0005739 ... D0VWW3 16371358
    16 2a06:A (2.1) BS01 JZR 1.10.2.2 GO:0005739 ... P31800 16024040
    17 2a06:B (2.1) BS01 JZR 1.10.2.2 GO:0004222 ... P23004 16024040
    18 2a06:F (2.1) BS01 JZR 1.10.2.2 GO:0005739 ... P00129 16024040
    19 2a06:P (2.1) BS01 JZR 1.10.2.2 GO:0005739 ... P00157 16024040
    20 2a06:S (2.1) BS01 JZR 1.10.2.2 GO:0005739 ... P00129 16024040
    21 3k22:A (2.1) BS03 JZR ? N/A P04150 19822747
    22 3k22:B (2.1) BS03 JZR ? N/A P04150 19822747
    23 3k22:B (2.1) BS04 JZR ? N/A P04150 19822747
    24 3peq:A (2.4) BS02 JZR ? GO:0003677 ... Q03181 21414782
    25 3peq:A (2.4) BS03 JZR ? GO:0003677 ... Q03181 21414782
    26 3peq:B (2.4) BS02 JZR ? GO:0003677 ... Q03181 21414782
    27 4yk5:A (1.42) BS03 JZR 1.11.1.-
    2.5.1.18
    5.3.99.3
    GO:0001516 ... O14684 25961169
    28 5bqg:A (1.436) BS03 JZR 1.11.1.-
    2.5.1.18
    5.3.99.3
    GO:0001516 ... O14684 26653180
    29 5tl9:A (1.2) BS03 JZR 1.11.1.-
    2.5.1.18
    5.3.99.3
    GO:0001516 ... O14684 28190634
    30 5y7x:A (1.699) BS02 JZR ? GO:0003677 ... Q03181 N/A
    31 5y7x:A (1.699) BS03 JZR ? GO:0003677 ... Q03181 N/A
    32 5y7x:B (1.699) BS01 JZR ? GO:0003677 ... Q03181 N/A
    33 5y7x:B (1.699) BS03 JZR ? GO:0003677 ... Q03181 N/A

    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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