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BioLiP Library
Download all results in tab-seperated text for 106 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1axm:A (3.0) BS01 IDS ? GO:0008083 ... P05230 9655399
    2 1axm:B (3.0) BS02 IDS ? GO:0008083 ... P05230 9655399
    3 1axm:C (3.0) BS02 IDS ? GO:0008083 ... P05230 9655399
    4 1axm:D (3.0) BS01 IDS ? GO:0008083 ... P05230 9655399
    5 1axm:E (3.0) BS01 IDS ? GO:0008083 ... P05230 9655399
    6 1axm:F (3.0) BS01 IDS ? GO:0008083 ... P05230 9655399
    7 1bfb:A (1.9) BS01 IDS ? GO:0008083 ... P09038 8599088
    8 1bfc:A (2.2) BS02 IDS ? GO:0008083 ... P09038 8599088
    9 1e0o:A (2.8) BS02 IDS ? GO:0001525 ... P05230 11069186
    10 1e0o:B (2.8) BS02 IDS 2.7.10.1 N/A P21802 11069186
    11 1fq9:A (3.0) BS02 IDS ? GO:0008083 ... P09038 11030354
    12 1fq9:A (3.0) BS04 IDS ? GO:0008083 ... P09038 11030354
    13 1fq9:B (3.0) BS02 IDS ? GO:0008083 ... P09038 11030354
    14 1fq9:C (3.0) BS03 IDS 2.7.10.1 N/A P11362 11030354
    15 1g5n:A (1.9) BS04 IDS ? GO:0001786 ... P14668 11342135
    16 1gmn:A (2.3) BS02 IDS ? N/A P14210 11597998
    17 1gmn:A (2.3) BS04 IDS ? N/A P14210 11597998
    18 1gmn:B (2.3) BS01 IDS ? N/A P14210 11597998
    19 1gmo:B (3.0) BS01 IDS ? N/A P14210 11597998
    20 1gmo:B (3.0) BS05 IDS ? N/A P14210 11597998
    21 1gmo:C (3.0) BS02 IDS ? N/A P14210 11597998
    22 1t8u:B (1.95) BS02 IDS 2.8.2.30 GO:0008146 ... Q9Y663 15304505
    23 1xt3:A (2.4) BS01 IDS ? GO:0005576 ... P60301 15590643 PDBbind: -logKd/Ki=5.70, Kd=2.01uM
    24 2axm:A (3.0) BS01 IDS ? GO:0008083 ... P05230 9655399
    25 2axm:B (3.0) BS02 IDS ? GO:0008083 ... P05230 9655399
    26 2axm:B (3.0) BS04 IDS ? GO:0008083 ... P05230 9655399
    27 2erm:A (-1.00) BS01 IDS ? GO:0001525 ... P05230 16995857
    28 2erm:A (-1.00) BS05 IDS ? GO:0001525 ... P05230 16995857
    29 2hyu:A (1.86) BS02 IDS ? GO:0001525 ... P07355 16882661
    30 2hyv:A (1.42) BS02 IDS ? GO:0001525 ... P07355 16882661
    31 2vra:A (3.2) BS01 IDS ? N/A O44924 18359766
    32 2vra:B (3.2) BS01 IDS ? N/A O44924 18359766
    33 3b9f:H (1.6) BS02 IDS 3.4.21.5 GO:0004252 ... P00734 18362344
    34 3evj:I (3.0) BS02 IDS ? GO:0002020 ... P01008 19452598
    35 3ina:A (1.9) BS02 IDS ? GO:0016829 ... Q89YQ6 19801541
    36 3ina:A (1.9) BS04 IDS ? GO:0016829 ... Q89YQ6 19801541
    37 3ina:A (1.9) BS06 IDS ? GO:0016829 ... Q89YQ6 19801541
    38 3mkp:C (2.81) BS02 IDS ? N/A P14210 N/A
    39 3mkp:C (2.81) BS03 IDS ? N/A P14210 N/A
    40 3ojv:A (2.6) BS02 IDS ? GO:0008083 ... P05230 22057274
    41 3ojv:B (2.6) BS02 IDS ? GO:0008083 ... P05230 22057274
    42 3qmk:A (2.21) BS02 IDS ? GO:0016020 ... P51693 21930949 PDBbind: -logKd/Ki=6.10, Kd=0.787uM
    43 3qmk:A (2.21) BS04 IDS ? GO:0016020 ... P51693 21930949 PDBbind: -logKd/Ki=6.10, Kd=0.787uM
    44 3uan:A (1.844) BS02 IDS 2.8.2.23 GO:0005794 ... O35310 22431632
    45 3uan:B (1.844) BS02 IDS 2.8.2.23 GO:0005794 ... O35310 22431632
    46 4ak2:A (1.35) BS02 IDS ? N/A Q89YS0 28630303
    47 4ak2:A (1.35) BS03 IDS ? N/A Q89YS0 28630303
    48 4c4n:A (2.36) BS01 IDS 3.1.-.- GO:0007267 ... Q62226 24062467 PDBbind: -logKd/Ki=6.10, Kd=0.8uM
    49 4pxq:A (2.2) BS03 IDS 5.1.3.17 GO:0000139 ... F1QR43 25568314
    50 4pxq:B (2.2) BS03 IDS 5.1.3.17 GO:0000139 ... F1QR43 25568314
    51 4qfj:A (2.196) BS02 IDS ? GO:0003676 ... Q5WRG2 N/A
    52 4qfj:A (2.196) BS03 IDS ? GO:0003676 ... Q5WRG2 N/A
    53 4qfj:B (2.196) BS01 IDS ? GO:0003676 ... Q5WRG2 N/A
    54 4qfj:B (2.196) BS02 IDS ? GO:0003676 ... Q5WRG2 N/A
    55 4r9w:B (2.5) BS01 IDS ? GO:0002548 ... P02776 26391892
    56 4rda:A (2.497) BS02 IDS ? GO:0016020 ... P51693 25760599
    57 4x7r:A (2.15) BS02 IDS 2.4.1.70 GO:0005737 ... A0A0H2WWV6 25624472
    58 4x7r:B (2.15) BS01 IDS 2.4.1.70 GO:0005737 ... A0A0H2WWV6 25624472
    59 5d65:B (3.1) BS01 IDS ? GO:0005576 ... P10147 27091995
    60 5dnf:C (2.549) BS01 IDS ? GO:0002407 ... P13501 27091995
    61 5dnf:D (2.549) BS02 IDS ? GO:0002407 ... P13501 27091995
    62 5dnf:I (2.549) BS01 IDS ? GO:0002407 ... P13501 27091995
    63 5ue2:A (-1.00) BS02 IDS 3.4.24.23 GO:0002779 ... P09237 28648610
    64 5ue5:A (-1.00) BS02 IDS 3.4.24.23 GO:0002779 ... P09237 28648610
    65 5ue5:A (-1.00) BS04 IDS 3.4.24.23 GO:0002779 ... P09237 28648610
    66 5uf6:A (2.8) BS01 IDS N/A GO:0005198 ... N/A 28480299
    67 5w1o:C (2.8) BS02 IDS ? GO:0005198 ... Q81007 21115492
    68 5w1o:D (2.8) BS01 IDS ? GO:0005198 ... Q81007 21115492
    69 5w1x:B (3.374) BS01 IDS ? GO:0005198 ... P06794 21115492
    70 5w1x:B (3.374) BS02 IDS ? GO:0005198 ... P06794 21115492
    71 5w1x:F (3.374) BS04 IDS ? GO:0005198 ... P06794 21115492
    72 5w1x:G (3.374) BS01 IDS ? GO:0005198 ... P06794 21115492
    73 5w1x:G (3.374) BS02 IDS ? GO:0005198 ... P06794 21115492
    74 5w1x:J (3.374) BS01 IDS ? GO:0005198 ... P06794 21115492
    75 5w1x:L (3.374) BS01 IDS ? GO:0005198 ... P06794 21115492
    76 5w1x:N (3.374) BS02 IDS ? GO:0005198 ... P06794 21115492
    77 5wd7:A (3.1) BS02 IDS ? GO:0000166 ... G4RIN4 28724897
    78 6e2z:A6 (3.4) BS01 IDS ? GO:0019062 ... Q805N7 30602608
    79 6ljl:A (1.73) BS02 IDS ? GO:0016829 ... B3C5J6 33627653
    80 6r0x:E (3.13) BS01 IDS ? GO:0016020 ... O95866 31436532
    81 6r0x:E (3.13) BS02 IDS ? GO:0016020 ... O95866 31436532
    82 6xkg:A (1.55) BS02 IDS 2.8.2.30 GO:0008146 ... Q9Y663 34458837
    83 6xkg:B (1.55) BS02 IDS 2.8.2.30 GO:0008146 ... Q9Y663 34458837
    84 6xkg:B (1.55) BS04 IDS 2.8.2.30 GO:0008146 ... Q9Y663 34458837
    85 6xl8:A (2.34) BS02 IDS 2.8.2.30 GO:0008146 ... Q9Y663 34458837
    86 6xl8:A (2.34) BS04 IDS 2.8.2.30 GO:0008146 ... Q9Y663 34458837
    87 6xl8:B (2.34) BS02 IDS 2.8.2.30 GO:0008146 ... Q9Y663 34458837
    88 6xl8:B (2.34) BS04 IDS 2.8.2.30 GO:0008146 ... Q9Y663 34458837
    89 7b8h:A (1.34) BS01 IDS 2.7.11.1 GO:0004672 ... P68400 33571828
    90 7mo7:A (4.8) BS03 IDS ? GO:0004252 ... P14210 34210960
    91 7mo8:A (4.5) BS01 IDS ? GO:0004252 ... P14210 34210960
    92 7mo9:A (4.0) BS02 IDS ? GO:0004252 ... P14210 34210960
    93 7moa:A (4.9) BS02 IDS ? GO:0004252 ... P14210 34210960
    94 7moa:A (4.9) BS04 IDS ? GO:0004252 ... P14210 34210960
    95 7moa:D (4.9) BS02 IDS ? GO:0004252 ... P14210 34210960
    96 7moa:D (4.9) BS04 IDS ? GO:0004252 ... P14210 34210960
    97 7moa:D (4.9) BS06 IDS ? GO:0004252 ... P14210 34210960
    98 7pgm:B (2.7) BS02 IDS ? N/A Q96QV1 34887403
    99 7qrn:A (1.83) BS02 IDS ? GO:0004867 ... R9TNA6 35967448
    100 7ysh:E (2.74) BS01 IDS 2.7.10.1 N/A P11362 37286607
    101 7ysu:C (3.2) BS01 IDS 2.7.10.1 N/A P22607 37286607
    102 7ysu:C (3.2) BS03 IDS 2.7.10.1 N/A P22607 37286607
    103 7ysu:E (3.2) BS03 IDS 2.7.10.1 N/A P22607 37286607
    104 7ysw:C (3.03) BS01 IDS 2.7.10.1 N/A P22455 37286607
    105 7ysw:C (3.03) BS03 IDS 2.7.10.1 N/A P22455 37286607
    106 8edi:B (2.11) BS02 IDS ? N/A Q26261 38363837
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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