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BioLiP Library
Download all results in tab-seperated text for 4792 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001 2j7a:O (2.3) BS02 HEC ? GO:0005886 ... Q72EF4 17139260
    1002 2j7a:O (2.3) BS03 HEC ? GO:0005886 ... Q72EF4 17139260
    1003 2j7a:O (2.3) BS04 HEC ? GO:0005886 ... Q72EF4 17139260
    1004 2j7a:O (2.3) BS05 HEC ? GO:0005886 ... Q72EF4 17139260
    1005 2j7a:P (2.3) BS01 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    1006 2j7a:P (2.3) BS02 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    1007 2j7a:P (2.3) BS03 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    1008 2j7a:P (2.3) BS04 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    1009 2j7a:P (2.3) BS05 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    1010 2j7a:P (2.3) BS08 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    1011 2j7a:P (2.3) BS09 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    1012 2j7a:Q (2.3) BS01 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    1013 2j7a:Q (2.3) BS02 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    1014 2j7a:Q (2.3) BS03 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    1015 2j7a:Q (2.3) BS04 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    1016 2j7a:Q (2.3) BS05 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    1017 2j7a:Q (2.3) BS06 HEC 1.7.2.2 GO:0005886 ... Q72EF3 17139260
    1018 2j7a:R (2.3) BS01 HEC ? GO:0005886 ... Q72EF4 17139260
    1019 2j7a:R (2.3) BS02 HEC ? GO:0005886 ... Q72EF4 17139260
    1020 2j7a:R (2.3) BS03 HEC ? GO:0005886 ... Q72EF4 17139260
    1021 2j7a:R (2.3) BS04 HEC ? GO:0005886 ... Q72EF4 17139260
    1022 2j7a:R (2.3) BS05 HEC ? GO:0005886 ... Q72EF4 17139260
    1023 2j8w:A (1.29) BS01 HEC ? GO:0005506 ... P00142 18295896
    1024 2j8w:B (1.29) BS01 HEC ? GO:0005506 ... P00142 18295896
    1025 2j8w:B (1.29) BS02 HEC ? GO:0005506 ... P00142 18295896
    1026 2j9b:A (1.5) BS01 HEC ? GO:0005506 ... P00142 18295896
    1027 2j9b:B (1.5) BS01 HEC ? GO:0005506 ... P00142 18295896
    1028 2jbl:C (2.4) BS01 HEC ? GO:0005506 ... P07173 17337272
    1029 2jbl:C (2.4) BS02 HEC ? GO:0005506 ... P07173 17337272
    1030 2jbl:C (2.4) BS03 HEC ? GO:0005506 ... P07173 17337272
    1031 2jbl:C (2.4) BS04 HEC ? GO:0005506 ... P07173 17337272
    1032 2je2:A (1.8) BS01 HEC ? GO:0046872 ... Q50927 17583915
    1033 2je3:A (1.8) BS01 HEC ? GO:0046872 ... Q50927 17583915
    1034 2jqr:A (-1.00) BS01 HEC ? GO:0005515 ... P00044 18439013
    1035 2jti:B (-1.00) BS01 HEC ? GO:0005515 ... P00044 20672804
    1036 2jxm:A (-1.00) BS02 HEC ? GO:0005507 ... P50057 18201089
    1037 2jxm:B (-1.00) BS01 HEC ? GO:0005506 ... Q8RN59 18201089
    1038 2k3v:A (-1.00) BS01 HEC ? GO:0042597 ... O33731 18950243
    1039 2k3v:A (-1.00) BS02 HEC ? GO:0042597 ... O33731 18950243
    1040 2k3v:A (-1.00) BS03 HEC ? GO:0042597 ... O33731 18950243
    1041 2k3v:A (-1.00) BS04 HEC ? GO:0042597 ... O33731 18950243
    1042 2kmy:A (-1.00) BS01 HEC ? GO:0009055 ... B8J2Z0 20886839
    1043 2kmy:A (-1.00) BS02 HEC ? GO:0009055 ... B8J2Z0 20886839
    1044 2kmy:A (-1.00) BS03 HEC ? GO:0009055 ... B8J2Z0 20886839
    1045 2kmy:A (-1.00) BS04 HEC ? GO:0009055 ... B8J2Z0 20886839
    1046 2ksu:A (-1.00) BS01 HEC ? GO:0009055 ... B8J2Z0 20886839
    1047 2ksu:A (-1.00) BS02 HEC ? GO:0009055 ... B8J2Z0 20886839
    1048 2ksu:A (-1.00) BS03 HEC ? GO:0009055 ... B8J2Z0 20886839
    1049 2ksu:A (-1.00) BS04 HEC ? GO:0009055 ... B8J2Z0 20886839
    1050 2l4d:A (-1.00) BS01 HEC ? GO:0009055 ... Q88I19 21181421
    1051 2ldo:A (-1.00) BS01 HEC ? GO:0009055 ... Q8GGK7 21861844
    1052 2ldo:A (-1.00) BS02 HEC ? GO:0009055 ... Q8GGK7 21861844
    1053 2ldo:A (-1.00) BS03 HEC ? GO:0009055 ... Q8GGK7 21861844
    1054 2lir:A (-1.00) BS01 HEC ? GO:0005515 ... P00044 22087268
    1055 2lit:A (-1.00) BS01 HEC ? GO:0005515 ... P00044 22087268
    1056 2mhm:A (-1.00) BS01 HEC ? GO:0005515 ... P00044 25210769
    1057 2mta:C (2.4) BS01 HEC ? GO:0005506 ... P29899 8140419
    1058 2mz9:A (-1.00) BS01 HEC ? GO:0009055 ... Q8GGK7 28062839
    1059 2mz9:A (-1.00) BS02 HEC ? GO:0009055 ... Q8GGK7 28062839
    1060 2mz9:A (-1.00) BS03 HEC ? GO:0009055 ... Q8GGK7 28062839
    1061 2n18:B (-1.00) BS01 HEC ? GO:0005515 ... P00044 25944250
    1062 2n18:C (-1.00) BS01 HEC ? GO:0005515 ... P00044 25944250
    1063 2n3b:A (-1.00) BS01 HEC ? GO:0005515 ... P00004 26487716
    1064 2n9i:A (-1.00) BS01 HEC ? GO:0005515 ... P99999 26718409
    1065 2n9j:A (-1.00) BS01 HEC ? GO:0005515 ... P99999 26718409
    1066 2orl:A (-1.00) BS01 HEC ? GO:0005515 ... P00044 17488096
    1067 2ot4:A (1.5) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1068 2ot4:A (1.5) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1069 2ot4:A (1.5) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1070 2ot4:A (1.5) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1071 2ot4:A (1.5) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1072 2ot4:A (1.5) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1073 2ot4:A (1.5) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1074 2ot4:A (1.5) BS09 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1075 2ot4:B (1.5) BS02 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1076 2ot4:B (1.5) BS03 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1077 2ot4:B (1.5) BS04 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1078 2ot4:B (1.5) BS05 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1079 2ot4:B (1.5) BS06 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1080 2ot4:B (1.5) BS07 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1081 2ot4:B (1.5) BS08 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1082 2ot4:B (1.5) BS09 HEC 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    1083 2oz1:A (2.35) BS01 HEC 2.8.5.2 GO:0004792 ... Q939U1 N/A
    1084 2oz1:A (2.35) BS02 HEC 2.8.5.2 GO:0004792 ... Q939U1 N/A
    1085 2oz1:B (2.35) BS01 HEC ? GO:0009055 ... Q939U4 N/A
    1086 2oz1:C (2.35) BS01 HEC 2.8.5.2 GO:0004792 ... Q939U1 N/A
    1087 2oz1:C (2.35) BS02 HEC 2.8.5.2 GO:0004792 ... Q939U1 N/A
    1088 2oz1:D (2.35) BS01 HEC ? GO:0009055 ... Q939U4 N/A
    1089 2oz1:E (2.35) BS01 HEC 2.8.5.2 GO:0004792 ... Q939U1 N/A
    1090 2oz1:E (2.35) BS02 HEC 2.8.5.2 GO:0004792 ... Q939U1 N/A
    1091 2oz1:F (2.35) BS01 HEC ? GO:0009055 ... Q939U4 N/A
    1092 2oz1:G (2.35) BS01 HEC 2.8.5.2 GO:0004792 ... Q939U1 N/A
    1093 2oz1:G (2.35) BS02 HEC 2.8.5.2 GO:0004792 ... Q939U1 N/A
    1094 2oz1:H (2.35) BS01 HEC ? GO:0009055 ... Q939U4 N/A
    1095 2ozy:A (1.74) BS01 HEC ? GO:0020037 ... P0ABL1 17521287
    1096 2ozy:A (1.74) BS02 HEC ? GO:0020037 ... P0ABL1 17521287
    1097 2ozy:A (1.74) BS03 HEC ? GO:0020037 ... P0ABL1 17521287
    1098 2ozy:A (1.74) BS04 HEC ? GO:0020037 ... P0ABL1 17521287
    1099 2ozy:A (1.74) BS05 HEC ? GO:0020037 ... P0ABL1 17521287
    1100 2p0b:A (1.74) BS01 HEC ? GO:0020037 ... P0ABL1 17521287
    1101 2p0b:A (1.74) BS02 HEC ? GO:0020037 ... P0ABL1 17521287
    1102 2p0b:A (1.74) BS03 HEC ? GO:0020037 ... P0ABL1 17521287
    1103 2p0b:A (1.74) BS04 HEC ? GO:0020037 ... P0ABL1 17521287
    1104 2p0b:A (1.74) BS05 HEC ? GO:0020037 ... P0ABL1 17521287
    1105 2pac:A (-1.00) BS01 HEC ? GO:0005506 ... P00099 1654086
    1106 2pcf:B (-1.00) BS01 HEC ? GO:0005506 ... P36438 9551554
    1107 2rdz:A (1.74) BS02 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1108 2rdz:A (1.74) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1109 2rdz:A (1.74) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1110 2rdz:A (1.74) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1111 2rdz:A (1.74) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1112 2rdz:A (1.74) BS07 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1113 2rdz:B (1.74) BS01 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1114 2rdz:B (1.74) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1115 2rdz:B (1.74) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1116 2rdz:B (1.74) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1117 2rdz:B (1.74) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1118 2rdz:B (1.74) BS07 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1119 2rdz:C (1.74) BS02 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1120 2rdz:C (1.74) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1121 2rdz:C (1.74) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1122 2rdz:C (1.74) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1123 2rdz:C (1.74) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1124 2rdz:C (1.74) BS07 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1125 2rdz:D (1.74) BS01 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1126 2rdz:D (1.74) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1127 2rdz:D (1.74) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1128 2rdz:D (1.74) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1129 2rdz:D (1.74) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1130 2rdz:D (1.74) BS07 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1131 2rf7:A (2.04) BS02 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1132 2rf7:A (2.04) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1133 2rf7:A (2.04) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1134 2rf7:A (2.04) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1135 2rf7:A (2.04) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1136 2rf7:A (2.04) BS07 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1137 2rf7:B (2.04) BS01 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1138 2rf7:B (2.04) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1139 2rf7:B (2.04) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1140 2rf7:B (2.04) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1141 2rf7:B (2.04) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1142 2rf7:B (2.04) BS07 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1143 2rf7:C (2.04) BS02 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1144 2rf7:C (2.04) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1145 2rf7:C (2.04) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1146 2rf7:C (2.04) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1147 2rf7:C (2.04) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1148 2rf7:C (2.04) BS07 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1149 2rf7:D (2.04) BS01 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1150 2rf7:D (2.04) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1151 2rf7:D (2.04) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1152 2rf7:D (2.04) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1153 2rf7:D (2.04) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1154 2rf7:D (2.04) BS07 HEC 1.7.2.2 GO:0005506 ... P0ABK9 18311941
    1155 2v07:A (1.6) BS01 HEC ? GO:0005506 ... Q93VA3 17625855
    1156 2v08:A (2.0) BS01 HEC ? GO:0005506 ... F2Z292 17625855
    1157 2v08:B (2.0) BS01 HEC ? GO:0005506 ... F2Z292 17625855
    1158 2vhd:A (2.3) BS01 HEC 1.11.1.5 GO:0004130 ... P14532 18217775
    1159 2vhd:A (2.3) BS02 HEC 1.11.1.5 GO:0004130 ... P14532 18217775
    1160 2vhd:B (2.3) BS01 HEC 1.11.1.5 GO:0004130 ... P14532 18217775
    1161 2vhd:B (2.3) BS02 HEC 1.11.1.5 GO:0004130 ... P14532 18217775
    1162 2vr0:A (2.8) BS01 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1163 2vr0:A (2.8) BS02 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1164 2vr0:A (2.8) BS03 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1165 2vr0:A (2.8) BS04 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1166 2vr0:A (2.8) BS05 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1167 2vr0:A (2.8) BS08 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1168 2vr0:A (2.8) BS09 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1169 2vr0:B (2.8) BS01 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1170 2vr0:B (2.8) BS02 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1171 2vr0:B (2.8) BS03 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1172 2vr0:B (2.8) BS04 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1173 2vr0:B (2.8) BS05 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1174 2vr0:B (2.8) BS06 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1175 2vr0:C (2.8) BS01 HEC 1.10.2.- GO:0005886 ... Q72EF4 18597779
    1176 2vr0:C (2.8) BS02 HEC 1.10.2.- GO:0005886 ... Q72EF4 18597779
    1177 2vr0:C (2.8) BS03 HEC 1.10.2.- GO:0005886 ... Q72EF4 18597779
    1178 2vr0:C (2.8) BS04 HEC 1.10.2.- GO:0005886 ... Q72EF4 18597779
    1179 2vr0:C (2.8) BS06 HEC 1.10.2.- GO:0005886 ... Q72EF4 18597779
    1180 2vr0:D (2.8) BS01 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1181 2vr0:D (2.8) BS02 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1182 2vr0:D (2.8) BS03 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1183 2vr0:D (2.8) BS04 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1184 2vr0:D (2.8) BS05 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1185 2vr0:D (2.8) BS06 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1186 2vr0:D (2.8) BS09 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1187 2vr0:D (2.8) BS10 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1188 2vr0:E (2.8) BS01 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1189 2vr0:E (2.8) BS02 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1190 2vr0:E (2.8) BS03 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1191 2vr0:E (2.8) BS04 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1192 2vr0:E (2.8) BS05 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1193 2vr0:E (2.8) BS06 HEC 1.7.2.2 GO:0042279 ... Q72EF3 18597779
    1194 2vr0:F (2.8) BS01 HEC 1.10.2.- GO:0005886 ... Q72EF4 18597779
    1195 2vr0:F (2.8) BS02 HEC 1.10.2.- GO:0005886 ... Q72EF4 18597779
    1196 2vr0:F (2.8) BS03 HEC 1.10.2.- GO:0005886 ... Q72EF4 18597779
    1197 2vr0:F (2.8) BS04 HEC 1.10.2.- GO:0005886 ... Q72EF4 18597779
    1198 2vr0:F (2.8) BS05 HEC 1.10.2.- GO:0005886 ... Q72EF4 18597779
    1199 2wjm:C (1.95) BS01 HEC ? GO:0005506 ... P07173 19743880
    1200 2wjm:C (1.95) BS02 HEC ? GO:0005506 ... P07173 19743880
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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