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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP Library
Download all results in tab-seperated text for 1074 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 7o0e:A (1.85) BS05 GLY 3.2.1.- GO:0004348 ... G2Q1N4 N/A
    802 7o0e:G (1.85) BS04 GLY 3.2.1.- GO:0004348 ... G2Q1N4 N/A
    803 7o0e:G (1.85) BS05 GLY 3.2.1.- GO:0004348 ... G2Q1N4 N/A
    804 7saa:A (2.97) BS01 GLY ? GO:0005216 ... P35439 35637422
    805 7saa:C (2.97) BS01 GLY ? GO:0005216 ... P35439 35637422
    806 7sac:A (3.69) BS01 GLY ? GO:0005216 ... P35439 35637422
    807 7sac:C (3.69) BS01 GLY ? GO:0005216 ... P35439 35637422
    808 7tin:A (2.35) BS02 GLY 2.2.1.9 GO:0000287 ... Q2FZL7 36633276
    809 7tin:C (2.35) BS02 GLY 2.2.1.9 GO:0000287 ... Q2FZL7 36633276
    810 7tvi:A (3.2) BS01 GLY ? GO:0004888 ... O93430 N/A
    811 7tvi:A (3.2) BS02 GLY ? GO:0004888 ... O93430 N/A
    812 7tvi:B (3.2) BS01 GLY ? GO:0004888 ... O93430 N/A
    813 7tvi:C (3.2) BS01 GLY ? GO:0004888 ... O93430 N/A
    814 7tvi:D (3.2) BS01 GLY ? GO:0004888 ... O93430 N/A
    815 7u6i:A (2.05) BS01 GLY ? N/A A0A1H0BKU7 36913566
    816 7v58:B (1.84) BS02 GLY 2.3.1.29 GO:0005829 ... U3BPN5 34838420
    817 7xqa:A (1.93) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    818 7xqa:B (1.93) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    819 7xqa:C (1.93) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    820 7xqa:D (1.93) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    821 7xqa:E (1.93) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    822 7xqa:F (1.93) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    823 7xqa:G (1.93) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    824 7xqa:H (1.93) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    825 7xx0:A (2.199) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    826 7xx0:B (2.199) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    827 7xx0:C (2.199) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    828 7xx0:D (2.199) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    829 7xx0:E (2.199) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    830 7xx0:F (2.199) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    831 7xx0:G (2.199) BS04 GLY ? GO:0000166 ... A0A125SZC1 37137912
    832 7xx0:H (2.199) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    833 7xxc:A (1.989) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    834 7xxc:B (1.989) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    835 7xxc:C (1.989) BS04 GLY ? GO:0000166 ... A0A125SZC1 37137912
    836 7xxc:D (1.989) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    837 7xxc:E (1.989) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    838 7xxc:F (1.989) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    839 7xxc:G (1.989) BS04 GLY ? GO:0000166 ... A0A125SZC1 37137912
    840 7xxc:H (1.989) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    841 7xxm:A (2.119) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    842 7xxm:B (2.119) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    843 7xxm:C (2.119) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    844 7xxm:D (2.119) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    845 7xxm:E (2.119) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    846 7xxm:F (2.119) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    847 7xxm:G (2.119) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    848 7xxm:H (2.119) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    849 7xxp:A (2.052) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    850 7xxp:B (2.052) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    851 7xxp:C (2.052) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    852 7xxp:D (2.052) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    853 7xxp:E (2.052) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    854 7xxp:F (2.052) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    855 7xxp:G (2.052) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    856 7xxp:H (2.052) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    857 7xyl:A (2.099) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    858 7xyl:B (2.099) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    859 7xyl:C (2.099) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    860 7xyl:D (2.099) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    861 7xyl:E (2.099) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    862 7xyl:F (2.099) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    863 7xyl:G (2.099) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    864 7xyl:H (2.099) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    865 7y0x:A (2.05) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    866 7y0x:B (2.05) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    867 7y0x:C (2.05) BS04 GLY ? GO:0000166 ... A0A125SZC1 37137912
    868 7y0x:D (2.05) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    869 7y0x:E (2.05) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    870 7y0x:F (2.05) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    871 7y0x:G (2.05) BS04 GLY ? GO:0000166 ... A0A125SZC1 37137912
    872 7y0x:H (2.05) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    873 7yff:A (3.6) BS01 GLY ? GO:0005216 ... Q05586 36959261
    874 7yff:C (3.6) BS01 GLY ? GO:0005216 ... Q05586 36959261
    875 7yfg:A (3.6) BS01 GLY ? GO:0005216 ... P35439 36959261
    876 7yfg:C (3.6) BS01 GLY ? GO:0005216 ... P35439 36959261
    877 7yfh:A (3.0) BS01 GLY ? GO:0005216 ... P35439 36959261
    878 7yfh:C (3.0) BS01 GLY ? GO:0005216 ... P35439 36959261
    879 7yfi:A (3.3) BS01 GLY ? GO:0005216 ... P35439 36959261
    880 7yfi:C (3.3) BS01 GLY ? GO:0005216 ... P35439 36959261
    881 7yfl:A (3.9) BS01 GLY ? GO:0015276 ... Q05586 36959261
    882 7yfl:C (3.9) BS01 GLY ? GO:0015276 ... Q05586 36959261
    883 7yfr:A (5.1) BS01 GLY ? GO:0015276 ... Q05586 36959261
    884 7yfr:C (5.1) BS01 GLY ? GO:0015276 ... Q05586 36959261
    885 7yw2:A (2.23) BS02 GLY 2.7.1.160 GO:0000215 ... Q8K3A2 37334830
    886 7yw2:A (2.23) BS03 GLY 2.7.1.160 GO:0000215 ... Q8K3A2 37334830
    887 7yw2:A (2.23) BS04 GLY 2.7.1.160 GO:0000215 ... Q8K3A2 37334830
    888 7yw2:A (2.23) BS05 GLY 2.7.1.160 GO:0000215 ... Q8K3A2 37334830
    889 7yw2:A (2.23) BS06 GLY 2.7.1.160 GO:0000215 ... Q8K3A2 37334830
    890 7yw2:A (2.23) BS09 GLY 2.7.1.160 GO:0000215 ... Q8K3A2 37334830
    891 7yw2:A (2.23) BS10 GLY 2.7.1.160 GO:0000215 ... Q8K3A2 37334830
    892 7z7c:A (1.22) BS02 GLY N/A N/A N/A 37605043
    893 8aue:A (1.82) BS03 GLY 1.3.1.42 GO:0005777 ... Q9FEW9 36846821
    894 8aue:B (1.82) BS03 GLY 1.3.1.42 GO:0005777 ... Q9FEW9 36846821
    895 8b51:B (1.84) BS02 GLY 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004482 ... Q5WPU5 36334638
    896 8blu:C (1.5) BS01 GLY ? N/A O00560 N/A
    897 8blu:C (1.5) BS02 GLY ? N/A O00560 N/A
    898 8blu:C (1.5) BS03 GLY ? N/A O00560 N/A
    899 8blu:D (1.5) BS01 GLY ? N/A O00560 N/A
    900 8c23:DDD (1.842) BS01 GLY 3.4.19.5 GO:0016787 ... P37595 37095066
    901 8c23:HHH (1.842) BS01 GLY 3.4.19.5 GO:0016787 ... P37595 37095066
    902 8dn2:A (3.9) BS01 GLY ? GO:0004888 ... P23415 37821459
    903 8dn2:C (3.9) BS01 GLY ? GO:0004888 ... P23415 37821459
    904 8dn2:D (3.9) BS01 GLY ? GO:0004888 ... P23415 37821459
    905 8dn5:A (3.63) BS01 GLY ? GO:0004888 ... P23415 37821459
    906 8dn5:B (3.63) BS01 GLY ? GO:0004888 ... P23415 37821459
    907 8dn5:B (3.63) BS02 GLY ? GO:0004888 ... P23415 37821459
    908 8dn5:C (3.63) BS01 GLY ? GO:0004888 ... P23415 37821459
    909 8dn5:C (3.63) BS02 GLY ? GO:0004888 ... P23415 37821459
    910 8dn5:D (3.63) BS01 GLY ? GO:0004888 ... P23415 37821459
    911 8dn5:E (3.63) BS01 GLY ? GO:0003674 ... P42212
    P48167    		 37821459
    912 8dn5:E (3.63) BS02 GLY ? GO:0003674 ... P42212
    P48167    		 37821459
    913 8e96:A (3.38) BS01 GLY ? GO:0001540 ... Q05586 36309015
    914 8e96:C (3.38) BS01 GLY ? GO:0001540 ... Q05586 36309015
    915 8eq0:A (2.62) BS01 GLY 2.7.1.40 GO:0000287 ... P0AD61 N/A
    916 8eq0:B (2.62) BS01 GLY 2.7.1.40 GO:0000287 ... P0AD61 N/A
    917 8fe1:A (3.0) BS01 GLY ? GO:0004888 ... O93430 36914669
    918 8fe1:A (3.0) BS04 GLY ? GO:0004888 ... O93430 36914669
    919 8fe1:C (3.0) BS01 GLY ? GO:0004888 ... O93430 36914669
    920 8fe1:E (3.0) BS01 GLY ? GO:0004888 ... Q6DC22 36914669
    921 8fjt:A (2.47) BS04 GLY 2.1.2.1 GO:0002082 ... P34897 37582241
    922 8fjt:B (2.47) BS04 GLY 2.1.2.1 GO:0002082 ... P34897 37582241
    923 8fqm:A (1.53) BS01 GLY 3.5.2.6 GO:0008800 ... Q6DRA1 37358467
    924 8fqn:A (1.256) BS01 GLY 3.5.2.6 GO:0008800 ... A7Y407 37358467
    925 8fqp:A (1.419) BS01 GLY 3.5.2.6 GO:0008800 ... A0A2H4PPJ8 37358467
    926 8fqp:B (1.419) BS01 GLY 3.5.2.6 GO:0008800 ... A0A2H4PPJ8 37358467
    927 8fqq:B (1.48) BS01 GLY 3.5.2.6 GO:0008800 ... A0A2H4PPJ8 37358467
    928 8fqr:B (1.24) BS01 GLY 3.5.2.6 GO:0008800 ... A8QIF8 37358467
    929 8gks:A (2.99) BS01 GLY 2.1.2.1 GO:0002082 ... P34897 38324671
    930 8gks:B (2.99) BS03 GLY 2.1.2.1 GO:0002082 ... P34897 38324671
    931 8gku:A (3.06) BS02 GLY 2.1.2.1 GO:0002082 ... P34897 38324671
    932 8gkw:A (2.38) BS01 GLY 2.1.2.1 GO:0002082 ... P34897 38324671
    933 8gkw:B (2.38) BS03 GLY 2.1.2.1 GO:0002082 ... P34897 38324671
    934 8gky:A (2.77) BS02 GLY 2.1.2.1 GO:0002082 ... P34897 38324671
    935 8gky:A (2.77) BS05 GLY 2.1.2.1 GO:0002082 ... P34897 38324671
    936 8gky:B (2.77) BS02 GLY 2.1.2.1 GO:0002082 ... P34897 38324671
    937 8gky:B (2.77) BS05 GLY 2.1.2.1 GO:0002082 ... P34897 38324671
    938 8gkz:A (2.75) BS01 GLY 2.1.2.1 GO:0002082 ... P34897 38324671
    939 8gkz:A (2.75) BS04 GLY 2.1.2.1 GO:0002082 ... P34897 38324671
    940 8gkz:B (2.75) BS01 GLY 2.1.2.1 GO:0002082 ... P34897 38324671
    941 8gkz:B (2.75) BS04 GLY 2.1.2.1 GO:0002082 ... P34897 38324671
    942 8gri:A (2.365) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    943 8gri:B (2.365) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    944 8gri:C (2.365) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    945 8gri:D (2.365) BS03 GLY ? GO:0000166 ... A0A125SZC1 37137912
    946 8gri:E (2.365) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    947 8gri:F (2.365) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    948 8gri:G (2.365) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    949 8gri:H (2.365) BS02 GLY ? GO:0000166 ... A0A125SZC1 37137912
    950 8h68:A (2.2) BS05 GLY 1.14.11.51 GO:0005515 ... P0AEX9
    Q8MNT9    		 36764665
    951 8of7:A (1.66) BS01 GLY ? GO:0016853 ... A0A401MXE6 37305956
    952 8of7:A (1.66) BS02 GLY ? GO:0016853 ... A0A401MXE6 37305956
    953 8of7:B (1.66) BS02 GLY ? GO:0016853 ... A0A401MXE6 37305956
    954 8ot0:A (2.21) BS02 GLY 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    955 8pi2:A (1.48) BS01 GLY ? GO:0002020 ... P01009 N/A
    956 8po9:C (2.2) BS04 GLY ? N/A Q24995 37729416
    957 8po9:D (2.2) BS03 GLY ? N/A Q24995 37729416
    958 8po9:E (2.2) BS03 GLY ? N/A Q24995 37729416
    959 8po9:F (2.2) BS03 GLY ? N/A Q24995 37729416
    960 8s3d:A (1.65) BS04 GLY N/A N/A G7JYL4 39142482
    961 8s3d:B (1.65) BS03 GLY N/A N/A G7JYL4 39142482
    962 8s3d:C (1.65) BS03 GLY N/A N/A G7JYL4 39142482
    963 8s3d:D (1.65) BS04 GLY N/A N/A G7JYL4 39142482
    964 8s3d:E (1.65) BS03 GLY N/A N/A G7JYL4 39142482
    965 8s3d:F (1.65) BS04 GLY N/A N/A G7JYL4 39142482
    966 8u8p:A (2.2) BS04 GLY ? GO:0005507 ... Q9XAL8 37926680
    967 8u8p:A (2.2) BS05 GLY ? GO:0005507 ... Q9XAL8 37926680
    968 8u8p:A (2.2) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    969 8u8p:A (2.2) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    970 8u8p:A (2.2) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    971 8u8p:A (2.2) BS10 GLY ? GO:0005507 ... Q9XAL8 37926680
    972 8u8p:A (2.2) BS11 GLY ? GO:0005507 ... Q9XAL8 37926680
    973 8u8p:B (2.2) BS01 GLY ? GO:0005507 ... Q9XAL8 37926680
    974 8u8p:B (2.2) BS05 GLY ? GO:0005507 ... Q9XAL8 37926680
    975 8u8p:B (2.2) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    976 8u8p:B (2.2) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    977 8u8p:B (2.2) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    978 8u8p:B (2.2) BS09 GLY ? GO:0005507 ... Q9XAL8 37926680
    979 8u8p:B (2.2) BS11 GLY ? GO:0005507 ... Q9XAL8 37926680
    980 8u8p:C (2.2) BS01 GLY ? GO:0005507 ... Q9XAL8 37926680
    981 8u8p:C (2.2) BS03 GLY ? GO:0005507 ... Q9XAL8 37926680
    982 8u8p:C (2.2) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    983 8u8p:C (2.2) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    984 8u8p:C (2.2) BS09 GLY ? GO:0005507 ... Q9XAL8 37926680
    985 8u8p:C (2.2) BS10 GLY ? GO:0005507 ... Q9XAL8 37926680
    986 8u8p:C (2.2) BS11 GLY ? GO:0005507 ... Q9XAL8 37926680
    987 8u8q:A (2.7) BS04 GLY ? GO:0005507 ... Q9XAL8 37926680
    988 8u8q:A (2.7) BS05 GLY ? GO:0005507 ... Q9XAL8 37926680
    989 8u8q:A (2.7) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    990 8u8q:A (2.7) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    991 8u8q:A (2.7) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    992 8u8q:A (2.7) BS10 GLY ? GO:0005507 ... Q9XAL8 37926680
    993 8u8q:B (2.7) BS01 GLY ? GO:0005507 ... Q9XAL8 37926680
    994 8u8q:B (2.7) BS05 GLY ? GO:0005507 ... Q9XAL8 37926680
    995 8u8q:B (2.7) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    996 8u8q:B (2.7) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    997 8u8q:B (2.7) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    998 8u8q:B (2.7) BS09 GLY ? GO:0005507 ... Q9XAL8 37926680
    999 8u8q:C (2.7) BS02 GLY ? GO:0005507 ... Q9XAL8 37926680
    1000 8u8q:C (2.7) BS03 GLY ? GO:0005507 ... Q9XAL8 37926680
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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