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BioLiP Library
Download all results in tab-seperated text for 1074 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1cvi:A (3.2) BS01 GLY 3.1.3.2
    3.1.3.48
    3.1.3.5    		 GO:0003993 ... P15309 10639192
    2 1cvi:B (3.2) BS01 GLY 3.1.3.2
    3.1.3.48
    3.1.3.5    		 GO:0003993 ... P15309 10639192
    3 1cvi:C (3.2) BS01 GLY 3.1.3.2
    3.1.3.48
    3.1.3.5    		 GO:0003993 ... P15309 10639192
    4 1cvi:D (3.2) BS01 GLY 3.1.3.2
    3.1.3.48
    3.1.3.5    		 GO:0003993 ... P15309 10639192
    5 1dpp:A (3.2) BS01 GLY ? GO:0006935 ... P23847 8563629
    6 1dpp:C (3.2) BS01 GLY ? GO:0006935 ... P23847 8563629
    7 1dpp:E (3.2) BS01 GLY ? GO:0006935 ... P23847 8563629
    8 1dpp:G (3.2) BS01 GLY ? GO:0006935 ... P23847 8563629
    9 1eqb:A (2.7) BS01 GLY 2.1.2.1 GO:0003824 ... P0A825 10858298
    10 1eqb:A (2.7) BS04 GLY 2.1.2.1 GO:0003824 ... P0A825 10858298
    11 1eqb:B (2.7) BS01 GLY 2.1.2.1 GO:0003824 ... P0A825 10858298
    12 1eqb:B (2.7) BS04 GLY 2.1.2.1 GO:0003824 ... P0A825 10858298
    13 1eqb:C (2.7) BS01 GLY 2.1.2.1 GO:0003824 ... P0A825 10858298
    14 1eqb:C (2.7) BS04 GLY 2.1.2.1 GO:0003824 ... P0A825 10858298
    15 1eqb:D (2.7) BS02 GLY 2.1.2.1 GO:0003824 ... P0A825 10858298
    16 1eqb:D (2.7) BS05 GLY 2.1.2.1 GO:0003824 ... P0A825 10858298
    17 1exf:A (2.1) BS01 GLY 3.4.21.- GO:0004252 ... P09331 9048539
    18 1gv8:A (1.95) BS01 GLY ? GO:0005576 ... P56410 11976488
    19 1kl1:A (1.93) BS02 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    20 1kl2:A (2.7) BS02 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    21 1kl2:A (2.7) BS04 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    22 1kl2:B (2.7) BS01 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    23 1kl2:B (2.7) BS04 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    24 1ls3:A (2.7) BS02 GLY 2.1.2.1 GO:0000900 ... P07511 12438316
    25 1ls3:C (2.7) BS01 GLY 2.1.2.1 GO:0000900 ... P07511 12438316
    26 1n2t:A (2.0) BS02 GLY 4.4.1.- GO:0016829 ... Q9ZHG9 12386155
    27 1n2t:B (2.0) BS03 GLY 4.4.1.- GO:0016829 ... Q9ZHG9 12386155
    28 1nd6:B (2.4) BS02 GLY 3.1.3.2
    3.1.3.48
    3.1.3.5    		 GO:0003993 ... P15309 12525165
    29 1o86:A (2.0) BS01 GLY 3.4.15.1 GO:0006508 ... P12821 12540854
    30 1p4v:A (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 12906830
    31 1p4v:C (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 12906830
    32 1p99:A (1.7) BS01 GLY ? N/A A0A0H3JTG5 15610013
    33 1pb7:A (1.35) BS01 GLY ? GO:0015276 ... P35439 12805203 BindingDB: IC50=6200nM
    34 1q7l:A (1.4) BS03 GLY 3.5.1.14 GO:0004046 ... Q03154 12933810
    35 1q7l:C (1.4) BS03 GLY 3.5.1.14 GO:0004046 ... Q03154 12933810
    36 1rv3:B (2.4) BS01 GLY 2.1.2.1 GO:0000900 ... P07511 15170323
    37 1uvq:A (1.8) BS02 GLY ? GO:0002250 ... E9PMV2 14769912
    38 1uze:A (1.82) BS01 GLY 3.4.15.1 GO:0006508 ... P12821 15236580
    39 1vd5:A (1.8) BS01 GLY 3.2.1.179 GO:0000272 ... Q9RC92 15148314
    40 1vd5:A (1.8) BS02 GLY 3.2.1.179 GO:0000272 ... Q9RC92 15148314
    41 1y6h:B (2.2) BS02 GLY 3.5.1.88 GO:0006412 ... Q93LE9 15123432
    42 1y79:1 (2.0) BS04 GLY 3.4.15.5 GO:0004180 ... P24171 15876371
    43 1yjs:A (2.0) BS02 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 15865438
    44 2a5t:A (2.0) BS01 GLY ? GO:0015276 ... P35439 16281028 BindingDB: IC50=6200nM
    45 2amy:A (2.09) BS01 GLY 5.4.2.8 GO:0004615 ... O15305 N/A
    46 2amy:A (2.09) BS02 GLY 5.4.2.8 GO:0004615 ... O15305 N/A
    47 2amy:A (2.09) BS03 GLY 5.4.2.8 GO:0004615 ... O15305 N/A
    48 2ci7:A (1.6) BS01 GLY 3.5.3.18 GO:0000052 ... P56965 16698551
    49 2hu5:A (2.0) BS01 GLY 3.4.19.1 GO:0004252 ... Q9YBQ2 17350041
    50 2hu8:B (2.4) BS01 GLY 3.4.19.1 GO:0004252 ... Q9YBQ2 17350041
    51 2hw2:A (1.45) BS01 GLY 2.4.2.30 GO:0016740 ... A0QRS5 18349144
    52 2hw2:A (1.45) BS02 GLY 2.4.2.30 GO:0016740 ... A0QRS5 18349144
    53 2igw:A (1.78) BS01 GLY 5.2.1.8 GO:0000413 ... P52011 17654646
    54 2j5n:A (1.63) BS01 GLY 1.2.1.88 GO:0000166 ... Q5SI02 N/A
    55 2j5n:B (1.63) BS01 GLY 1.2.1.88 GO:0000166 ... Q5SI02 N/A
    56 2pmu:E (1.779) BS01 GLY ? GO:0000160 ... Q7D9B8 18052041
    57 2q4r:A (2.09) BS01 GLY 5.4.2.8 GO:0004615 ... O15305 17850744
    58 2q4r:A (2.09) BS02 GLY 5.4.2.8 GO:0004615 ... O15305 17850744
    59 2q4r:A (2.09) BS03 GLY 5.4.2.8 GO:0004615 ... O15305 17850744
    60 2rc7:A (1.58) BS01 GLY ? GO:0015276 ... Q9R1M7 18636091
    61 2rc7:B (1.58) BS01 GLY ? GO:0015276 ... Q9R1M7 18636091
    62 2rca:A (1.58) BS01 GLY ? GO:0015276 ... Q8VHN2 18636091 MOAD: Kd=16.4nM
    63 2rca:B (1.58) BS01 GLY ? GO:0015276 ... Q8VHN2 18636091
    64 2rlc:A (1.8) BS01 GLY 2.3.1.-
    3.5.1.-
    3.5.1.24    		 GO:0006629 ... P54965 N/A
    65 2ux0:E (2.46) BS01 GLY 2.7.11.17 GO:0004683 ... Q13555 20668654
    66 2vgt:A (1.86) BS01 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 17651438
    67 2vgv:A (2.3) BS01 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 17651438
    68 2vgw:A (1.86) BS01 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 17651438
    69 2vi9:A (2.0) BS01 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 N/A
    70 2vib:A (1.85) BS01 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 N/A
    71 2vl1:A (2.15) BS01 GLY 3.5.1.6 GO:0003837 ... Q96W94 18448119
    72 2vl1:A (2.15) BS02 GLY 3.5.1.6 GO:0003837 ... Q96W94 18448119
    73 2vl1:A (2.15) BS05 GLY 3.5.1.6 GO:0003837 ... Q96W94 18448119
    74 2vl1:B (2.15) BS01 GLY 3.5.1.6 GO:0003837 ... Q96W94 18448119
    75 2vl1:B (2.15) BS02 GLY 3.5.1.6 GO:0003837 ... Q96W94 18448119
    76 2vl1:B (2.15) BS03 GLY 3.5.1.6 GO:0003837 ... Q96W94 18448119
    77 2vl1:C (2.15) BS01 GLY 3.5.1.6 GO:0003837 ... Q96W94 18448119
    78 2vl1:C (2.15) BS02 GLY 3.5.1.6 GO:0003837 ... Q96W94 18448119
    79 2vl1:C (2.15) BS03 GLY 3.5.1.6 GO:0003837 ... Q96W94 18448119
    80 2vl1:D (2.15) BS01 GLY 3.5.1.6 GO:0003837 ... Q96W94 18448119
    81 2vl1:D (2.15) BS02 GLY 3.5.1.6 GO:0003837 ... Q96W94 18448119
    82 2vl1:D (2.15) BS03 GLY 3.5.1.6 GO:0003837 ... Q96W94 18448119
    83 2vmo:A (1.74) BS01 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 19046138
    84 2vmq:A (1.67) BS01 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 19046138
    85 2vms:A (2.15) BS01 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 19046138
    86 2vmu:A (1.84) BS01 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 19046138
    87 2vmy:A (2.7) BS01 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 19046138
    88 2vmy:A (2.7) BS04 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 19046138
    89 2vmy:B (2.7) BS01 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 19046138
    90 2vmy:B (2.7) BS03 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 19046138
    91 2vmz:A (1.7) BS01 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 19046138
    92 2vq1:A (2.5) BS01 GLY N/A N/A N/A 19173313
    93 2vq1:A (2.5) BS02 GLY N/A N/A N/A 19173313
    94 2vq1:B (2.5) BS01 GLY N/A N/A N/A 19173313
    95 2vq1:E (2.5) BS01 GLY N/A N/A N/A 19173313
    96 2vq1:E (2.5) BS02 GLY N/A N/A N/A 19173313
    97 2vq1:E (2.5) BS03 GLY N/A N/A N/A 19173313
    98 2vq1:F (2.5) BS01 GLY N/A N/A N/A 19173313
    99 2vq1:F (2.5) BS02 GLY N/A N/A N/A 19173313
    100 2w7e:A (1.69) BS01 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 18699779
    101 2w7h:A (1.67) BS01 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 18699779
    102 2w7j:A (1.68) BS01 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 18699779
    103 2w7m:A (1.86) BS01 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 18699779
    104 2xqf:A (2.1) BS02 GLY 3.1.1.8 GO:0001540 ... P06276 21454498
    105 2xqg:A (2.3) BS03 GLY 3.1.1.8 GO:0001540 ... P06276 21454498
    106 2xqi:A (2.6) BS02 GLY 3.1.1.8 GO:0001540 ... P06276 21454498
    107 2xqj:A (2.4) BS02 GLY 3.1.1.8 GO:0001540 ... P06276 21454498
    108 2xqk:A (2.4) BS01 GLY 3.1.1.8 GO:0001540 ... P06276 21454498
    109 2yd1:A (1.8) BS01 GLY 3.1.3.48 N/A P16621 21454754
    110 2ys6:A (2.21) BS01 GLY 6.3.4.13 GO:0003824 ... Q5L3C7 20716513
    111 2z0a:A (1.85) BS01 GLY ? GO:0003723 ... Q5H7J4 N/A
    112 2z0a:A (1.85) BS02 GLY ? GO:0003723 ... Q5H7J4 N/A
    113 2z0a:C (1.85) BS01 GLY ? GO:0003723 ... Q5H7J4 N/A
    114 2z0a:D (1.85) BS01 GLY ? GO:0003723 ... Q5H7J4 N/A
    115 2zt7:A (2.7) BS01 GLY 2.7.7.-
    6.1.1.14    		 GO:0000166 ... P41250 N/A
    116 3cpa:A (2.0) BS01 GLY 3.4.17.1 GO:0004181 ... P00730 3463986
    117 3cvz:A (2.4) BS01 GLY ? N/A Q183M8 19183279
    118 3cvz:C (2.4) BS01 GLY ? N/A Q183M8 19183279
    119 3cvz:D (2.4) BS01 GLY ? N/A Q183M8 19183279
    120 3dwc:B (2.1) BS01 GLY 3.4.17.19 GO:0004180 ... Q6ZXC0 18793339
    121 3f4j:A (2.15) BS01 GLY ? GO:0005886 ... O67854 19074341 MOAD: Ki=322000nM
    122 3kgr:A (1.8) BS01 GLY ? N/A Q6GTX8 20007810
    123 3kgr:B (1.8) BS01 GLY ? N/A Q6GTX8 20007810
    124 3lir:A (1.9) BS07 GLY 3.4.24.65 GO:0004222 ... P39900 20817735
    125 3ljq:C (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 20800597
    126 3lms:A (2.5) BS02 GLY 3.4.17.20 GO:0004181 ... Q96IY4 20088943
    127 3lu1:A (2.5) BS03 GLY 5.1.3.7 GO:0000166 ... Q7BJX9 21384454
    128 3lu1:B (2.5) BS03 GLY 5.1.3.7 GO:0000166 ... Q7BJX9 21384454
    129 3lu1:C (2.5) BS03 GLY 5.1.3.7 GO:0000166 ... Q7BJX9 21384454
    130 3pgy:A (1.92) BS01 GLY 2.1.2.1 GO:0003824 ... Q5HE87 N/A
    131 3pgy:B (1.92) BS01 GLY 2.1.2.1 GO:0003824 ... Q5HE87 N/A
    132 3pgy:B (1.92) BS02 GLY 2.1.2.1 GO:0003824 ... Q5HE87 N/A
    133 3qlr:A (2.149) BS03 GLY 1.5.1.3 GO:0004146 ... P22906 21726415
    134 3qlr:A (2.149) BS04 GLY 1.5.1.3 GO:0004146 ... P22906 21726415
    135 3qls:A (1.733) BS03 GLY 1.5.1.3 GO:0004146 ... P22906 21726415
    136 3rgl:A (2.45) BS01 GLY 6.1.1.14 GO:0000166 ... Q9PPK3 N/A
    137 3ru7:A (2.6) BS02 GLY 5.1.3.7 GO:0000166 ... Q7BJX9 N/A
    138 3ru9:C (2.21) BS01 GLY 5.1.3.7 GO:0000166 ... Q7BJX9 N/A
    139 3ru9:D (2.21) BS01 GLY 5.1.3.7 GO:0000166 ... Q7BJX9 N/A
    140 3td3:A (1.59) BS01 GLY ? GO:0016020 ... Q6RYW5 21965596
    141 3td3:B (1.59) BS01 GLY ? GO:0016020 ... Q6RYW5 21965596
    142 3td3:C (1.59) BS01 GLY ? GO:0016020 ... Q6RYW5 21965596
    143 3td3:D (1.59) BS01 GLY ? GO:0016020 ... Q6RYW5 21965596 MOAD: Kd=0.59uM
    144 3td3:E (1.59) BS01 GLY ? GO:0016020 ... Q6RYW5 21965596 MOAD: Kd=0.59uM
    145 3td3:F (1.59) BS01 GLY ? GO:0016020 ... Q6RYW5 21965596 MOAD: Kd=0.59uM
    146 3td3:G (1.59) BS01 GLY ? GO:0016020 ... Q6RYW5 21965596 MOAD: Kd=0.59uM
    147 3td3:H (1.59) BS01 GLY ? GO:0016020 ... Q6RYW5 21965596 MOAD: Kd=0.59uM
    148 3tqe:A (1.5) BS01 GLY 2.3.1.39 GO:0004314 ... Q83E39 26033498
    149 3tqe:A (1.5) BS02 GLY 2.3.1.39 GO:0004314 ... Q83E39 26033498
    150 3wgb:D (2.6) BS02 GLY 4.1.2.49 GO:0005829 ... O07051 24914980
    151 3zdq:A (2.85) BS01 GLY 3.6.3.43 GO:0005524 ... Q9NRK6 23716676
    152 3zok:A (2.4) BS02 GLY 4.2.3.4 GO:0003856 ... U3KRF2 23916589
    153 3zok:B (2.4) BS02 GLY 4.2.3.4 GO:0003856 ... U3KRF2 23916589
    154 3zok:C (2.4) BS02 GLY 4.2.3.4 GO:0003856 ... U3KRF2 23916589
    155 3zok:D (2.4) BS02 GLY 4.2.3.4 GO:0003856 ... U3KRF2 23916589
    156 3zok:D (2.4) BS03 GLY 4.2.3.4 GO:0003856 ... U3KRF2 23916589
    157 4aqd:A (2.5) BS04 GLY 3.1.1.8 GO:0004104 ... P06276 22726956
    158 4aqd:B (2.5) BS03 GLY 3.1.1.8 GO:0004104 ... P06276 22726956
    159 4ayt:A (2.85) BS01 GLY ? GO:0005524 ... Q9NRK6 23716676
    160 4ayx:A (2.9) BS01 GLY ? GO:0005524 ... Q9NRK6 23716676
    161 4b0o:A (2.35) BS02 GLY 3.1.1.8 GO:0001540 ... P06276 22922115
    162 4b0p:A (2.5) BS02 GLY 3.1.1.8 GO:0001540 ... P06276 22922115
    163 4buo:A (2.75) BS02 GLY ? GO:0004930 ... P20789 24453215
    164 4buo:B (2.75) BS02 GLY ? GO:0004930 ... P20789 24453215
    165 4buo:B (2.75) BS03 GLY ? GO:0004930 ... P20789 24453215
    166 4cpa:A (2.5) BS01 GLY 3.4.17.1 GO:0004181 ... P00730 7154070
    167 4cpa:B (2.5) BS01 GLY 3.4.17.1 GO:0004181 ... P00730 7154070
    168 4f8l:A (1.5) BS03 GLY ? N/A P31522 23277582
    169 4fro:A (1.75) BS02 GLY 2.4.1.37
    2.4.1.40    		 GO:0005975 ... P16442 24265507
    170 4g1p:A (2.547) BS03 GLY 3.4.13.- GO:0005737 ... P43616 N/A
    171 4hoe:A (1.76) BS03 GLY 1.5.1.3 GO:0004146 ... P22906 24568657
    172 4hof:A (1.76) BS03 GLY 1.5.1.3 GO:0004146 ... P22906 24568657
    173 4kr3:A (3.235) BS02 GLY 2.7.7.-
    6.1.1.14    		 GO:0000166 ... P41250 24898252
    174 4ku8:A (1.994) BS01 GLY 2.7.11.12 GO:0004692 ... Q13976 24239458
    175 4ku8:A (1.994) BS02 GLY 2.7.11.12 GO:0004692 ... Q13976 24239458
    176 4ku8:A (1.994) BS03 GLY 2.7.11.12 GO:0004692 ... Q13976 24239458
    177 4ku8:B (1.994) BS01 GLY 2.7.11.12 GO:0004692 ... Q13976 24239458
    178 4lhc:A (1.899) BS01 GLY 1.4.4.2 GO:0004375 ... P74416 24121504
    179 4lhc:A (1.899) BS02 GLY 1.4.4.2 GO:0004375 ... P74416 24121504
    180 4lhc:A (1.899) BS03 GLY 1.4.4.2 GO:0004375 ... P74416 24121504
    181 4lhc:A (1.899) BS04 GLY 1.4.4.2 GO:0004375 ... P74416 24121504
    182 4lhc:B (1.899) BS01 GLY 1.4.4.2 GO:0004375 ... P74416 24121504
    183 4lhd:A (1.7959) BS01 GLY 1.4.4.2 GO:0004375 ... P74416 24121504
    184 4lhd:A (1.7959) BS02 GLY 1.4.4.2 GO:0004375 ... P74416 24121504
    185 4lhd:A (1.7959) BS03 GLY 1.4.4.2 GO:0004375 ... P74416 24121504
    186 4lhd:B (1.7959) BS01 GLY 1.4.4.2 GO:0004375 ... P74416 24121504
    187 4mb4:A (1.481) BS01 GLY 3.2.1.14 GO:0004553 ... B1VBB0 24598737
    188 4mb4:A (1.481) BS02 GLY 3.2.1.14 GO:0004553 ... B1VBB0 24598737
    189 4mb5:A (1.639) BS01 GLY 3.2.1.14 GO:0004553 ... B1VBB0 24598737
    190 4n1m:A (1.15) BS01 GLY 5.2.1.8 GO:0000413 ... P62937 N/A
    191 4nf5:A (1.903) BS01 GLY ? GO:0015276 ... P35439 24462099
    192 4nf6:A (2.1) BS01 GLY ? GO:0015276 ... P35439 24462099
    193 4nf8:A (1.856) BS01 GLY ? GO:0015276 ... P35439 24462099
    194 4o0d:A (1.95) BS01 GLY 3.4.19.5
    3.5.1.1    		 GO:0001917 ... Q7L266 24768817
    195 4o0d:A (1.95) BS02 GLY 3.4.19.5
    3.5.1.1    		 GO:0001917 ... Q7L266 24768817
    196 4o0d:B (1.95) BS01 GLY 3.4.19.5
    3.5.1.1    		 GO:0001917 ... Q7L266 24768817
    197 4o0d:B (1.95) BS02 GLY 3.4.19.5
    3.5.1.1    		 GO:0001917 ... Q7L266 24768817
    198 4o0f:A (1.92) BS01 GLY 3.4.19.5
    3.5.1.1    		 GO:0001917 ... Q7L266 24768817
    199 4o0f:A (1.92) BS02 GLY 3.4.19.5
    3.5.1.1    		 GO:0001917 ... Q7L266 24768817
    200 4o0f:B (1.92) BS01 GLY 3.4.19.5
    3.5.1.1    		 GO:0001917 ... Q7L266 24768817
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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