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BioLiP Library
Download all results in tab-seperated text for 5 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6g3q:A (1.01) BS02 FO9 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 30344913 MOAD: Ki=57.9nM
    PDBbind: -logKd/Ki=7.24, Ki=57.9nM
    2 6g3v:A (1.69) BS02 FO9 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 30344913 MOAD: Ki=922.4nM
    PDBbind: -logKd/Ki=6.04, Ki=922.4nM
    3 6g3v:B (1.69) BS02 FO9 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 30344913 MOAD: Ki=922.4nM
    4 7ul3:A (3.0) BS01 FO9 ? GO:0001696 ... P25021
    P41145    		 36396979
    5 8iyv:A (2.1) BS02 FO9 N/A N/A P00760 39216203
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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