Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●D-I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●D-QUARK ●DRfold ●DRfold2 ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred ●TCRfinder

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●DeepMSA2 ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP Library
Download all results in tab-seperated text for 86 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1dfo:A (2.4) BS02 FFO 2.1.2.1 GO:0003824 ... P0A825 10656824 PDBbind: -logKd/Ki=6.70, Ki=0.2uM
    2 1dfo:A (2.4) BS04 FFO 2.1.2.1 GO:0003824 ... P0A825 10656824 PDBbind: -logKd/Ki=6.70, Ki=0.2uM
    3 1dfo:B (2.4) BS02 FFO 2.1.2.1 GO:0003824 ... P0A825 10656824 PDBbind: -logKd/Ki=6.70, Ki=0.2uM
    4 1dfo:B (2.4) BS04 FFO 2.1.2.1 GO:0003824 ... P0A825 10656824 PDBbind: -logKd/Ki=6.70, Ki=0.2uM
    5 1dfo:B (2.4) BS05 FFO 2.1.2.1 GO:0003824 ... P0A825 10656824 PDBbind: -logKd/Ki=6.70, Ki=0.2uM
    6 1dfo:C (2.4) BS02 FFO 2.1.2.1 GO:0003824 ... P0A825 10656824
    7 1dfo:C (2.4) BS04 FFO 2.1.2.1 GO:0003824 ... P0A825 10656824
    8 1dfo:D (2.4) BS01 FFO 2.1.2.1 GO:0003824 ... P0A825 10656824
    9 1dfo:D (2.4) BS03 FFO 2.1.2.1 GO:0003824 ... P0A825 10656824
    10 1dfo:D (2.4) BS05 FFO 2.1.2.1 GO:0003824 ... P0A825 10656824
    11 1eqb:A (2.7) BS03 FFO 2.1.2.1 GO:0003824 ... P0A825 10858298
    12 1eqb:A (2.7) BS05 FFO 2.1.2.1 GO:0003824 ... P0A825 10858298
    13 1eqb:B (2.7) BS03 FFO 2.1.2.1 GO:0003824 ... P0A825 10858298
    14 1eqb:B (2.7) BS06 FFO 2.1.2.1 GO:0003824 ... P0A825 10858298
    15 1eqb:B (2.7) BS07 FFO 2.1.2.1 GO:0003824 ... P0A825 10858298
    16 1eqb:C (2.7) BS03 FFO 2.1.2.1 GO:0003824 ... P0A825 10858298
    17 1eqb:C (2.7) BS05 FFO 2.1.2.1 GO:0003824 ... P0A825 10858298
    18 1eqb:D (2.7) BS01 FFO 2.1.2.1 GO:0003824 ... P0A825 10858298
    19 1eqb:D (2.7) BS04 FFO 2.1.2.1 GO:0003824 ... P0A825 10858298
    20 1eqb:D (2.7) BS07 FFO 2.1.2.1 GO:0003824 ... P0A825 10858298
    21 1jol:A (1.96) BS01 FFO 1.5.1.3 GO:0004146 ... P0ABQ4 8679526
    22 1jol:B (1.96) BS01 FFO 1.5.1.3 GO:0004146 ... P0ABQ4 8679526
    23 1jom:A (1.9) BS02 FFO 1.5.1.3 GO:0004146 ... P0ABQ4 8679526
    24 1pj7:A (2.1) BS01 FFO 1.5.3.10 GO:0000166 ... Q9AGP8 12912903
    25 1wop:A (2.0) BS01 FFO 2.1.2.10 GO:0004047 ... Q9WY54 15355973
    26 1wop:A (2.0) BS02 FFO 2.1.2.10 GO:0004047 ... Q9WY54 15355973
    27 2vmy:A (2.7) BS03 FFO 2.1.2.1 GO:0003824 ... Q7SIB6 19046138
    28 2vmy:A (2.7) BS06 FFO 2.1.2.1 GO:0003824 ... Q7SIB6 19046138
    29 2vmy:B (2.7) BS02 FFO 2.1.2.1 GO:0003824 ... Q7SIB6 19046138
    30 2vmy:B (2.7) BS05 FFO 2.1.2.1 GO:0003824 ... Q7SIB6 19046138
    31 3uwl:B (2.07) BS01 FFO 2.1.1.45 GO:0004799 ... Q834R3 22948925
    32 3uwl:D (2.07) BS01 FFO 2.1.1.45 GO:0004799 ... Q834R3 22948925
    33 6qxs:B (2.88) BS02 FFO 2.1.1.45 GO:0004799 ... Q834R3 30935102
    34 6qxs:D (2.88) BS02 FFO 2.1.1.45 GO:0004799 ... Q834R3 30935102
    35 6qya:B (1.76) BS02 FFO 2.1.1.45 GO:0004799 ... Q834R3 30935102
    36 6qya:D (1.76) BS02 FFO 2.1.1.45 GO:0004799 ... Q834R3 30935102
    37 6qyq:B (2.25) BS01 FFO 2.1.1.45 GO:0000900 ... P04818 30959951
    38 6qyq:D (2.25) BS01 FFO 2.1.1.45 GO:0000900 ... P04818 30959951
    39 6r2e:A (2.55) BS01 FFO 2.1.1.45 GO:0000900 ... P04818 30987202
    40 6r2e:B (2.55) BS01 FFO 2.1.1.45 GO:0000900 ... P04818 30987202
    41 6r2e:C (2.55) BS01 FFO 2.1.1.45 GO:0000900 ... P04818 30987202
    42 6r2e:D (2.55) BS01 FFO 2.1.1.45 GO:0000900 ... P04818 30987202
    43 6r2e:E (2.55) BS01 FFO 2.1.1.45 GO:0000900 ... P04818 30987202
    44 6r2e:F (2.55) BS01 FFO 2.1.1.45 GO:0000900 ... P04818 30987202
    45 6r2e:G (2.55) BS01 FFO 2.1.1.45 GO:0000900 ... P04818 30987202
    46 6r2e:H (2.55) BS01 FFO 2.1.1.45 GO:0000900 ... P04818 30987202
    47 6uxj:A (1.4) BS02 FFO 2.1.2.1 GO:0004372 ... A0A0R0IK90 32014996 MOAD: Kd=17uM
    48 6uxj:A (1.4) BS04 FFO 2.1.2.1 GO:0004372 ... A0A0R0IK90 32014996 MOAD: Kd=17uM
    49 6uxj:B (1.4) BS02 FFO 2.1.2.1 GO:0004372 ... A0A0R0IK90 32014996 MOAD: Kd=17uM
    50 6uxj:B (1.4) BS04 FFO 2.1.2.1 GO:0004372 ... A0A0R0IK90 32014996 MOAD: Kd=17uM
    51 6uxj:C (1.4) BS02 FFO 2.1.2.1 GO:0004372 ... A0A0R0IK90 32014996 MOAD: Kd=17uM
    52 6uxj:C (1.4) BS04 FFO 2.1.2.1 GO:0004372 ... A0A0R0IK90 32014996 MOAD: Kd=17uM
    53 6uxj:D (1.4) BS02 FFO 2.1.2.1 GO:0004372 ... A0A0R0IK90 32014996 MOAD: Kd=17uM
    54 6uxj:D (1.4) BS04 FFO 2.1.2.1 GO:0004372 ... A0A0R0IK90 32014996 MOAD: Kd=17uM
    55 7th4:A (1.45) BS02 FFO 1.5.1.54 GO:0000166 ... Q5SLG6 36592927
    56 7th4:B (1.45) BS02 FFO 1.5.1.54 GO:0000166 ... Q5SLG6 36592927
    57 8dsk:A (1.63) BS02 FFO 2.1.2.1 GO:0004372 ... A0A0R0IK90 37811683
    58 8dsk:A (1.63) BS04 FFO 2.1.2.1 GO:0004372 ... A0A0R0IK90 37811683
    59 8dsk:B (1.63) BS02 FFO 2.1.2.1 GO:0004372 ... A0A0R0IK90 37811683
    60 8dsk:B (1.63) BS04 FFO 2.1.2.1 GO:0004372 ... A0A0R0IK90 37811683
    61 8dsk:C (1.63) BS02 FFO 2.1.2.1 GO:0004372 ... A0A0R0IK90 37811683
    62 8dsk:C (1.63) BS04 FFO 2.1.2.1 GO:0004372 ... A0A0R0IK90 37811683
    63 8dsk:D (1.63) BS02 FFO 2.1.2.1 GO:0004372 ... A0A0R0IK90 37811683
    64 8dsk:D (1.63) BS04 FFO 2.1.2.1 GO:0004372 ... A0A0R0IK90 37811683
    65 8fsd:A (1.49) BS02 FFO 2.1.2.1 GO:0004372 ... A0A0R0IK90 37811683
    66 8fsd:A (1.49) BS04 FFO 2.1.2.1 GO:0004372 ... A0A0R0IK90 37811683
    67 8fsd:B (1.49) BS02 FFO 2.1.2.1 GO:0004372 ... A0A0R0IK90 37811683
    68 8fsd:B (1.49) BS04 FFO 2.1.2.1 GO:0004372 ... A0A0R0IK90 37811683
    69 8fsd:C (1.49) BS02 FFO 2.1.2.1 GO:0004372 ... A0A0R0IK90 37811683
    70 8fsd:C (1.49) BS04 FFO 2.1.2.1 GO:0004372 ... A0A0R0IK90 37811683
    71 8fsd:D (1.49) BS02 FFO 2.1.2.1 GO:0004372 ... A0A0R0IK90 37811683
    72 8fsd:D (1.49) BS04 FFO 2.1.2.1 GO:0004372 ... A0A0R0IK90 37811683
    73 9boh:A (2.0) BS02 FFO N/A N/A Q5SI56 39148791
    74 9boh:B (2.0) BS02 FFO N/A N/A Q5SI56 39148791
    75 9bow:A (1.8) BS03 FFO N/A N/A Q5SI56 39148791
    76 9bow:B (1.8) BS03 FFO N/A N/A Q5SI56 39148791
    77 9box:A (2.1) BS02 FFO N/A N/A P34897 39148791
    78 9box:A (2.1) BS04 FFO N/A N/A P34897 39148791
    79 9box:B (2.1) BS02 FFO N/A N/A P34897 39148791
    80 9box:B (2.1) BS04 FFO N/A N/A P34897 39148791
    81 9box:C (2.1) BS02 FFO N/A N/A P34897 39148791
    82 9box:C (2.1) BS04 FFO N/A N/A P34897 39148791
    83 9box:D (2.1) BS02 FFO N/A N/A P34897 39148791
    84 9box:D (2.1) BS04 FFO N/A N/A P34897 39148791
    85 9bpe:A (2.0) BS01 FFO N/A N/A Q5SI56 39148791
    86 9bpe:B (2.0) BS01 FFO N/A N/A Q5SI56 39148791
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417