Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●D-I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●D-QUARK ●DRfold ●DRfold2 ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred ●TCRfinder

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●DeepMSA2 ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP Library
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2oi2:A (2.5) BS02 DP6 2.7.1.36 GO:0004496 ... A0A0H2UNK6 17400916 MOAD: Kd=500nM
    PDBbind: -logKd/Ki=6.30, Kd=500nM
    2 4dpw:A (2.605) BS02 DP6 4.1.1.33 GO:0004163 ... Q9FD73 22734632
    3 4dpw:B (2.605) BS02 DP6 4.1.1.33 GO:0004163 ... Q9FD73 22734632
    4 4dpw:C (2.605) BS02 DP6 4.1.1.33 GO:0004163 ... Q9FD73 22734632
    5 4dpw:D (2.605) BS02 DP6 4.1.1.33 GO:0004163 ... Q9FD73 22734632
    6 4dpw:E (2.605) BS02 DP6 4.1.1.33 GO:0004163 ... Q9FD73 22734632
    7 4dpw:F (2.605) BS02 DP6 4.1.1.33 GO:0004163 ... Q9FD73 22734632
    8 4dpw:G (2.605) BS02 DP6 4.1.1.33 GO:0004163 ... Q9FD73 22734632
    9 4dpw:H (2.605) BS02 DP6 4.1.1.33 GO:0004163 ... Q9FD73 22734632
    10 4du7:A (2.201) BS01 DP6 4.1.1.33 GO:0004163 ... Q9FD73 22734632
    11 4du7:B (2.201) BS01 DP6 4.1.1.33 GO:0004163 ... Q9FD73 22734632
    12 5gmd:A (1.5) BS01 DP6 4.1.1.33 GO:0004163 ... Q97UL5 28003359
    13 5gme:A (1.7) BS01 DP6 4.1.1.33 GO:0004163 ... Q97UL5 28003359
    14 6e2t:A (1.692) BS01 DP6 4.1.1.33 GO:0004163 ... Q9FD68 32769976
    15 6e2u:A (2.05) BS01 DP6 4.1.1.33 GO:0004163 ... Q9FD68 32769976
    16 6e2v:A (2.1) BS01 DP6 4.1.1.33 GO:0004163 ... Q9FD68 32769976
    17 6e2w:A (1.95) BS02 DP6 4.1.1.33 GO:0004163 ... Q9FD68 32769976
    18 6e2y:A (2.34) BS02 DP6 4.1.1.33 GO:0004163 ... Q9FD68 32769976
    19 6n0y:A (2.2) BS01 DP6 4.1.1.33 GO:0004163 ... E8N6F3 31268677
    20 6n0y:B (2.2) BS01 DP6 4.1.1.33 GO:0004163 ... E8N6F3 31268677
    21 6n0y:C (2.2) BS01 DP6 4.1.1.33 GO:0004163 ... E8N6F3 31268677
    22 6n0y:D (2.2) BS01 DP6 4.1.1.33 GO:0004163 ... E8N6F3 31268677
    23 6n0y:E (2.2) BS01 DP6 4.1.1.33 GO:0004163 ... E8N6F3 31268677
    24 6n0y:F (2.2) BS01 DP6 4.1.1.33 GO:0004163 ... E8N6F3 31268677
    25 6n0z:A (1.95) BS01 DP6 4.1.1.33 GO:0004163 ... E8N6F3 31268677
    26 6n0z:B (1.95) BS01 DP6 4.1.1.33 GO:0004163 ... E8N6F3 31268677
    27 6n0z:C (1.95) BS01 DP6 4.1.1.33 GO:0004163 ... E8N6F3 31268677
    28 6n0z:D (1.95) BS01 DP6 4.1.1.33 GO:0004163 ... E8N6F3 31268677
    29 6n0z:E (1.95) BS01 DP6 4.1.1.33 GO:0004163 ... E8N6F3 31268677
    30 6n0z:F (1.95) BS01 DP6 4.1.1.33 GO:0004163 ... E8N6F3 31268677
    31 6n10:A (2.3) BS01 DP6 4.1.1.33 GO:0004163 ... O23722 31268677
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417