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BioLiP Library
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1b66:A (1.9) BS02 BIO 4.2.3.12 GO:0003874 ... P27213 10024455
    2 1b66:B (1.9) BS02 BIO 4.2.3.12 GO:0003874 ... P27213 10024455
    3 1sep:A (1.95) BS02 BIO 1.1.1.153 GO:0004757 ... Q64105 9405351
    4 1y13:A (2.2) BS02 BIO 4.2.3.12 GO:0003874 ... C6KTB6 N/A
    5 1y13:A (2.2) BS03 BIO 4.2.3.12 GO:0003874 ... C6KTB6 N/A
    6 1y13:B (2.2) BS02 BIO 4.2.3.12 GO:0003874 ... C6KTB6 N/A
    7 1y13:B (2.2) BS03 BIO 4.2.3.12 GO:0003874 ... C6KTB6 N/A
    8 1y13:C (2.2) BS01 BIO 4.2.3.12 GO:0003874 ... C6KTB6 N/A
    9 1y13:C (2.2) BS03 BIO 4.2.3.12 GO:0003874 ... C6KTB6 N/A
    10 2a0s:A (2.2) BS02 BIO 4.2.3.12 GO:0003874 ... A5K2B2 N/A
    11 2a0s:B (2.2) BS01 BIO 4.2.3.12 GO:0003874 ... A5K2B2 N/A
    12 2bd0:D (1.7) BS02 BIO 1.1.1.325 GO:0000166 ... Q8KES3 16308317
    13 3qna:A (2.5) BS01 BIO N/A N/A N/A 24816091
    14 3qna:A (2.5) BS03 BIO N/A N/A N/A 24816091
    15 3qna:B (2.5) BS01 BIO N/A N/A N/A 24816091
    16 3qna:B (2.5) BS02 BIO N/A N/A N/A 24816091
    17 3qna:C (2.5) BS01 BIO N/A N/A N/A 24816091
    18 3qna:C (2.5) BS02 BIO N/A N/A N/A 24816091
    19 3qna:D (2.5) BS01 BIO N/A N/A N/A 24816091
    20 3qna:D (2.5) BS03 BIO N/A N/A N/A 24816091
    21 3qna:E (2.5) BS01 BIO N/A N/A N/A 24816091
    22 3qna:E (2.5) BS02 BIO N/A N/A N/A 24816091
    23 3qna:F (2.5) BS01 BIO N/A N/A N/A 24816091
    24 3qna:F (2.5) BS02 BIO N/A N/A N/A 24816091
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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