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BioLiP Library
Download all results in tab-seperated text for 38 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1bp4:A (2.2) BS01 ALD 3.4.22.2 GO:0006508 ... P00784 9804696
    2 4nnn:H (2.5) BS01 ALD 3.4.25.1 GO:0004298 ... P25043 24403024 PDBbind: -logKd/Ki=6.57, IC50=270nM
    3 4nnn:K (2.5) BS01 ALD 3.4.25.1 GO:0004298 ... P30656 24403024
    4 4nnn:N (2.5) BS01 ALD 3.4.25.1 GO:0000502 ... P38624 24403024
    5 4nnn:V (2.5) BS01 ALD 3.4.25.1 GO:0004298 ... P25043 24403024
    6 4nnn:V (2.5) BS03 ALD 3.4.25.1 GO:0004298 ... P25043 24403024
    7 4nnn:Y (2.5) BS01 ALD 3.4.25.1 GO:0004298 ... P30656 24403024
    8 4nnn:b (2.5) BS01 ALD 3.4.25.1 GO:0000502 ... P38624 24403024
    9 5d0t:K (2.6) BS01 ALD 3.4.25.1 GO:0004298 ... P30656 26964885
    10 5d0t:N (2.6) BS01 ALD 3.4.25.1 GO:0000502 ... P38624 26964885
    11 5d0t:Y (2.6) BS02 ALD 3.4.25.1 GO:0004298 ... P30656 26964885
    12 5d0t:b (2.6) BS01 ALD 3.4.25.1 GO:0000502 ... P38624 26964885
    13 5fgh:H (2.8) BS01 ALD 3.4.25.1 GO:0004298 ... P25043 26964885
    14 5fgh:K (2.8) BS02 ALD 3.4.25.1 GO:0004298 ... P30656 26964885
    15 5fgh:N (2.8) BS02 ALD 3.4.25.1 GO:0000502 ... P38624 26964885
    16 5fgh:V (2.8) BS02 ALD 3.4.25.1 GO:0004298 ... P25043 26964885
    17 5fgh:Y (2.8) BS02 ALD 3.4.25.1 GO:0004298 ... P30656 26964885
    18 5fgh:b (2.8) BS01 ALD 3.4.25.1 GO:0000502 ... P38624 26964885
    19 7be7:A (1.68) BS01 ALD 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 34769210
    20 7be7:B (1.68) BS01 ALD 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 34769210
    21 7bgp:A (1.68) BS01 ALD 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 34769210
    22 7bgp:B (1.68) BS01 ALD 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 34769210
    23 7cuu:A (1.68) BS01 ALD 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 34075025
    24 7cuu:B (1.68) BS01 ALD 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 34075025
    25 7nf5:A (1.94) BS01 ALD 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 34769210
    26 7ng3:A (1.8) BS01 ALD 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 34769210
    27 7ng3:B (1.8) BS01 ALD 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 34769210
    28 7ng6:A (1.87) BS01 ALD 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 34769210
    29 7ng6:B (1.87) BS01 ALD 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 34769210
    30 7qkd:A (1.5) BS01 ALD 3.4.22.15 GO:0006508 ... P07711 38630165
    31 7qkd:B (1.5) BS01 ALD 3.4.22.15 GO:0006508 ... P07711 38630165
    32 7qkd:C (1.5) BS01 ALD 3.4.22.15 GO:0006508 ... P07711 38630165
    33 7qkd:D (1.5) BS01 ALD 3.4.22.15 GO:0006508 ... P07711 38630165
    34 7wqb:A (1.87) BS01 ALD 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    35 7wqk:A (2.15) BS02 ALD 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    36 8p54:A (1.6) BS01 ALD 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38051605
    37 8p55:A (1.85) BS01 ALD 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38051605
    38 8p86:A (1.85) BS01 ALD 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38051605
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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