Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●D-I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●D-QUARK ●DRfold ●DRfold2 ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred ●TCRfinder

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●DeepMSA2 ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP Library
Download all results in tab-seperated text for 29 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1d3v:A (1.7) BS03 ABH 3.5.3.1 GO:0000050 ... P07824 10542097 MOAD: Kd=0.11uM
    PDBbind: -logKd/Ki=6.96, Kd=0.11uM
    2 1d3v:B (1.7) BS03 ABH 3.5.3.1 GO:0000050 ... P07824 10542097 MOAD: Kd=0.11uM
    3 2aeb:A (1.29) BS03 ABH 3.5.3.1 GO:0000050 ... P05089 16141327 MOAD: Kd=5nM
    PDBbind: -logKd/Ki=8.30, Kd=5nM
    4 2aeb:B (1.29) BS03 ABH 3.5.3.1 GO:0000050 ... P05089 16141327 MOAD: Kd=5nM
    5 2pll:A (1.9) BS03 ABH 3.5.3.1 GO:0000050 ... P05089 17562323 MOAD: Kd=5nM
    PDBbind: -logKd/Ki=8.30, Kd=5nM
    6 2pll:B (1.9) BS03 ABH 3.5.3.1 GO:0000050 ... P05089 17562323 MOAD: Kd=5nM
    7 3e6k:A (2.1) BS03 ABH 3.5.3.1 GO:0000050 ... P05089 19093830 MOAD: Kd=7000nM
    PDBbind: -logKd/Ki=5.15, Kd=7uM
    8 3e6k:B (2.1) BS03 ABH 3.5.3.1 GO:0000050 ... P05089 19093830 MOAD: Kd=7000nM
    9 3e6v:A (1.72) BS03 ABH 3.5.3.1 GO:0000050 ... P05089 19093830 MOAD: Kd=147nM
    PDBbind: -logKd/Ki=6.83, Kd=147nM
    10 3e6v:B (1.72) BS03 ABH 3.5.3.1 GO:0000050 ... P05089 19093830 MOAD: Kd=147nM
    11 3mmr:A (2.14) BS03 ABH 3.5.3.1 GO:0000050 ... Q8I384 20527960 MOAD: Kd=11uM
    PDBbind: -logKd/Ki=4.96, Kd=11uM
    12 3thh:A (1.85) BS03 ABH 3.5.3.1 GO:0000050 ... P05089 21870783
    13 3thh:B (1.85) BS01 ABH 3.5.3.1 GO:0000050 ... P05089 21870783
    14 4gsv:A (1.48) BS01 ABH 3.5.3.1 GO:0000050 ... P05089 23061982
    15 4gsv:B (1.48) BS01 ABH 3.5.3.1 GO:0000050 ... P05089 23061982
    16 4gsz:A (2.2) BS04 ABH 3.5.3.1 GO:0000050 ... P05089 23061982
    17 4gsz:B (2.2) BS03 ABH 3.5.3.1 GO:0000050 ... P05089 23061982
    18 4gwd:A (1.53) BS04 ABH 3.5.3.1 GO:0000050 ... P05089 23061982
    19 4gwd:B (1.53) BS04 ABH 3.5.3.1 GO:0000050 ... P05089 23061982
    20 4iu0:A (1.77) BS03 ABH 3.5.3.1 GO:0000050 ... Q6TUJ5 23583962 MOAD: Ki=1.3uM
    PDBbind: -logKd/Ki=5.89, Ki=1.3uM
    21 4q3q:A (2.001) BS03 ABH 3.5.3.1 GO:0000050 ... Q6WVP6 25007099 MOAD: Kd=1.3uM
    PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    22 4q3q:B (2.001) BS03 ABH 3.5.3.1 GO:0000050 ... Q6WVP6 25007099 MOAD: Kd=1.3uM
    23 4q3q:C (2.001) BS03 ABH 3.5.3.1 GO:0000050 ... Q6WVP6 25007099 MOAD: Kd=1.3uM
    24 4q3q:D (2.001) BS03 ABH 3.5.3.1 GO:0000050 ... Q6WVP6 25007099 MOAD: Kd=1.3uM
    25 6q92:A (1.5) BS03 ABH 3.5.3.1 GO:0000050 ... P05089 32647818 PDBbind: -logKd/Ki=6.10, Kd=797nM
    26 6q92:B (1.5) BS03 ABH 3.5.3.1 GO:0000050 ... P05089 32647818
    27 6q9p:A (1.66) BS03 ABH 3.5.3.1 GO:0000050 ... P05089 32647818
    28 6q9p:B (1.66) BS03 ABH 3.5.3.1 GO:0000050 ... P05089 32647818
    29 7eun:B (1.28) BS05 ABH 3.5.3.25 GO:0004053 ... D2Z025 35634777
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417