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BioLiP Library
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    828001 8wi9:t (3.5) BS02 peptide ? GO:0000028 ... A0QSD5 38245551
    828002 8wi9:u (3.5) BS01 rna ? GO:0003723 ... A0R102 38245551
    828003 8wi9:v (3.5) BS01 rna ? N/A A0QR10 38245551
    828004 8wi9:w (3.5) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    828005 8wib:1 (3.5) BS01 rna ? GO:0003735 ... A0QV03 38245551
    828006 8wib:2 (3.5) BS01 rna ? GO:0003735 ... A0QSD9 38245551
    828007 8wib:3 (3.5) BS01 rna ? GO:0003735 ... A0QSG7 38245551
    828008 8wib:4 (3.5) BS01 rna ? GO:0003735 ... A0R215 38245551
    828009 8wib:5 (3.5) BS01 rna ? GO:0003735 ... A0R3I9 38245551
    828010 8wib:6 (3.5) BS01 rna ? GO:0003735 ... A0QS39 38245551
    828011 8wib:7 (3.5) BS01 rna ? GO:0003735 ... A0R7K0 38245551
    828012 8wib:8 (3.5) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    828013 8wib:E (3.5) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    828014 8wib:F (3.5) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    828015 8wib:G (3.5) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    828016 8wib:H (3.5) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    828017 8wib:H (3.5) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    828018 8wib:I (3.5) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    828019 8wib:J (3.5) BS01 rna ? GO:0003735 ... A0R7F6 38245551
    828020 8wib:M (3.5) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    828021 8wib:N (3.5) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    828022 8wib:N (3.5) BS02 rna ? GO:0003735 ... A0QSF9 38245551
    828023 8wib:O (3.5) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    828024 8wib:Q (3.5) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    828025 8wib:R (3.5) BS01 rna ? GO:0003735 ... A0QSG5 38245551
    828026 8wib:R (3.5) BS02 rna ? GO:0003735 ... A0QSG5 38245551
    828027 8wib:S (3.5) BS01 rna ? GO:0003735 ... A0QV42 38245551
    828028 8wib:S (3.5) BS02 rna ? GO:0003735 ... A0QV42 38245551
    828029 8wib:T (3.5) BS01 rna ? GO:0000027 ... A0QYU6 38245551
    828030 8wib:U (3.5) BS01 rna ? GO:0003723 ... A0R151 38245551
    828031 8wib:V (3.5) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    828032 8wib:W (3.5) BS01 rna ? GO:0000027 ... A0QSD3 38245551
    828033 8wib:X (3.5) BS01 rna ? GO:0003723 ... A0QSG0 38245551
    828034 8wib:Z (3.5) BS01 rna ? GO:0003735 ... A0R150 38245551
    828035 8wib:Z (3.5) BS02 rna ? GO:0003735 ... A0R150 38245551
    828036 8wib:d (3.5) BS01 rna ? GO:0003676 ... A0QSD7 38245551
    828037 8wib:e (3.5) BS01 rna ? GO:0003723 ... A0QSL7 38245551
    828038 8wib:f (3.5) BS01 rna ? GO:0003723 ... A0QSG6 38245551
    828039 8wib:g (3.5) BS01 rna ? GO:0003735 ... N/A 38245551
    828040 8wib:g (3.5) BS02 rna ? GO:0003735 ... N/A 38245551
    828041 8wib:h (3.5) BS01 rna ? GO:0000028 ... A0QS97 38245551
    828042 8wib:h (3.5) BS02 rna ? GO:0000028 ... A0QS97 38245551
    828043 8wib:i (3.5) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    828044 8wib:j (3.5) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    828045 8wib:k (3.5) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    828046 8wib:l (3.5) BS01 rna ? GO:0003735 ... A0QSL6 38245551
    828047 8wib:l (3.5) BS02 rna ? GO:0003735 ... A0QSL6 38245551
    828048 8wib:m (3.5) BS01 rna ? GO:0000049 ... A0QS96 38245551
    828049 8wib:n (3.5) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    828050 8wib:o (3.5) BS01 rna ? GO:0003735 ... A0R550 38245551
    828051 8wib:p (3.5) BS01 rna ? GO:0003735 ... A0QVQ3 38245551
    828052 8wib:p (3.5) BS02 rna ? GO:0003735 ... A0QVQ3 38245551
    828053 8wib:q (3.5) BS01 rna ? GO:0003735 ... A0QV37 38245551
    828054 8wib:r (3.5) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    828055 8wib:s (3.5) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    828056 8wib:t (3.5) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    828057 8wib:u (3.5) BS01 rna ? GO:0003723 ... A0R102 38245551
    828058 8wib:v (3.5) BS01 rna ? N/A A0QR10 38245551
    828059 8wib:w (3.5) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    828060 8wic:1 (3.5) BS01 rna ? GO:0003735 ... A0QV03 38245551
    828061 8wic:2 (3.5) BS01 rna ? GO:0003735 ... A0QSD9 38245551
    828062 8wic:3 (3.5) BS01 rna ? GO:0003735 ... A0QSG7 38245551
    828063 8wic:3 (3.5) BS02 rna ? GO:0003735 ... A0QSG7 38245551
    828064 8wic:5 (3.5) BS01 rna ? GO:0003735 ... A0R3I9 38245551
    828065 8wic:6 (3.5) BS01 rna ? GO:0003735 ... A0QS39 38245551
    828066 8wic:7 (3.5) BS01 rna ? GO:0003735 ... A0R7K0 38245551
    828067 8wic:8 (3.5) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    828068 8wic:E (3.5) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    828069 8wic:F (3.5) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    828070 8wic:G (3.5) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    828071 8wic:H (3.5) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    828072 8wic:H (3.5) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    828073 8wic:I (3.5) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    828074 8wic:J (3.5) BS01 rna ? GO:0003735 ... A0R7F6 38245551
    828075 8wic:M (3.5) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    828076 8wic:N (3.5) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    828077 8wic:O (3.5) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    828078 8wic:Q (3.5) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    828079 8wic:R (3.5) BS01 rna ? GO:0003735 ... A0QSG5 38245551
    828080 8wic:R (3.5) BS02 rna ? GO:0003735 ... A0QSG5 38245551
    828081 8wic:S (3.5) BS01 rna ? GO:0003735 ... A0QV42 38245551
    828082 8wic:T (3.5) BS01 rna ? GO:0000027 ... A0QYU6 38245551
    828083 8wic:U (3.5) BS01 rna ? GO:0003723 ... A0R151 38245551
    828084 8wic:V (3.5) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    828085 8wic:W (3.5) BS01 rna ? GO:0000027 ... A0QSD3 38245551
    828086 8wic:X (3.5) BS01 rna ? GO:0003723 ... A0QSG0 38245551
    828087 8wic:Z (3.5) BS01 rna ? GO:0003735 ... A0R150 38245551
    828088 8wic:Z (3.5) BS02 rna ? GO:0003735 ... A0R150 38245551
    828089 8wid:d (3.5) BS01 rna ? GO:0003676 ... A0QSD7 38245551
    828090 8wid:e (3.5) BS01 rna ? GO:0003723 ... A0QSL7 38245551
    828091 8wid:f (3.5) BS01 rna ? GO:0003723 ... A0QSG6 38245551
    828092 8wid:g (3.5) BS01 rna ? GO:0003735 ... A0R7F9 38245551
    828093 8wid:h (3.5) BS01 rna ? GO:0000028 ... A0QS97 38245551
    828094 8wid:h (3.5) BS02 rna ? GO:0000028 ... A0QS97 38245551
    828095 8wid:i (3.5) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    828096 8wid:j (3.5) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    828097 8wid:k (3.5) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    828098 8wid:l (3.5) BS01 rna ? GO:0003735 ... A0QSL6 38245551
    828099 8wid:l (3.5) BS02 rna ? GO:0003735 ... A0QSL6 38245551
    828100 8wid:m (3.5) BS01 rna ? GO:0000049 ... A0QS96 38245551
    828101 8wid:n (3.5) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    828102 8wid:o (3.5) BS01 rna ? GO:0003735 ... A0R550 38245551
    828103 8wid:p (3.5) BS01 rna ? GO:0003735 ... A0QVQ3 38245551
    828104 8wid:q (3.5) BS01 rna ? GO:0003735 ... A0QV37 38245551
    828105 8wid:r (3.5) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    828106 8wid:s (3.5) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    828107 8wid:t (3.5) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    828108 8wid:t (3.5) BS02 peptide ? GO:0000028 ... A0QSD5 38245551
    828109 8wid:u (3.5) BS01 rna ? GO:0003723 ... A0R102 38245551
    828110 8wid:v (3.5) BS01 rna ? N/A A0QR10 38245551
    828111 8wid:w (3.5) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    828112 8wid:w (3.5) BS02 rna ? GO:0006417 ... A0QZ86 38245551
    828113 8wif:c (2.9) BS01 rna ? GO:0003735 ... A0QVB8 38245551
    828114 8wif:d (2.9) BS01 rna ? GO:0003676 ... A0QSD7 38245551
    828115 8wif:e (2.9) BS01 rna ? GO:0003723 ... A0QSL7 38245551
    828116 8wif:f (2.9) BS01 rna ? GO:0003723 ... A0QSG6 38245551
    828117 8wif:g (2.9) BS01 rna ? GO:0003735 ... A0R7F9 38245551
    828118 8wif:h (2.9) BS01 rna ? GO:0000028 ... A0QS97 38245551
    828119 8wif:i (2.9) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    828120 8wif:j (2.9) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    828121 8wif:k (2.9) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    828122 8wif:l (2.9) BS01 rna ? GO:0003735 ... A0QSL6 38245551
    828123 8wif:m (2.9) BS01 rna ? GO:0000049 ... A0QS96 38245551
    828124 8wif:n (2.9) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    828125 8wif:o (2.9) BS01 rna ? GO:0003735 ... A0R550 38245551
    828126 8wif:p (2.9) BS01 rna ? GO:0003735 ... A0QVQ3 38245551
    828127 8wif:q (2.9) BS01 rna ? GO:0003735 ... A0QV37 38245551
    828128 8wif:r (2.9) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    828129 8wif:s (2.9) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    828130 8wif:t (2.9) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    828131 8wif:t (2.9) BS02 peptide ? GO:0000028 ... A0QSD5 38245551
    828132 8wif:u (2.9) BS01 rna ? GO:0003723 ... A0R102 38245551
    828133 8wif:v (2.9) BS01 rna ? N/A A0QR10 38245551
    828134 8wif:w (2.9) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    828135 8wik:A (2.0) BS01 6FA 1.6.5.- GO:0003677 ... Q9BRQ8 38414669
    828136 8wik:A (2.0) BS02 NAD 1.6.5.- GO:0003677 ... Q9BRQ8 38414669
    828137 8wil:A (2.1) BS01 MG 3.6.4.13 GO:0001172 ... A0A7D0QVD8 38296832
    828138 8wim:A (1.84) BS01 MG 3.6.4.13 GO:0003968 ... A0A7D0QVD8 38296832
    828139 8wiu:A (1.4) BS01 WPR ? N/A O60885 38142510
    828140 8wjy:A (1.88) BS01 W9X 2.7.11.1 GO:0004672 ... Q99640 38146659
    828141 8wkj:A (1.7) BS01 PLP 2.6.1.- GO:0003824 ... A0A130QXX8 37984176
    828142 8wkl:A (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    828143 8wkl:B (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    828144 8wkl:C (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    828145 8wkl:D (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    828146 8wkl:E (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    828147 8wkl:F (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    828148 8wkl:G (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    828149 8wkl:H (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    828150 8wko:A (2.91) BS01 LLP ? GO:0003824 ... A0A0G9F7S9 38568076
    828151 8wko:A (2.91) BS02 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    828152 8wko:B (2.91) BS01 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    828153 8wko:B (2.91) BS02 LLP ? GO:0003824 ... A0A0G9F7S9 38568076
    828154 8wkp:AS2P (4.62) BS01 rna ? GO:0003735 ... P39478 38599770
    828155 8wkp:AS2P (4.62) BS02 UNK ? GO:0003735 ... P39478 38599770
    828156 8wkp:AS2P (4.62) BS03 UNK ? GO:0003735 ... P39478 38599770
    828157 8wkp:AS2P (4.62) BS04 UNK ? GO:0003735 ... P39478 38599770
    828158 8wkp:AS2P (4.62) BS05 UNK ? GO:0003735 ... P39478 38599770
    828159 8wkp:AS3P (4.62) BS01 rna ? GO:0003676 ... Q4JB46 38599770
    828160 8wkp:AS4E (4.62) BS01 rna ? GO:0003723 ... O05634 38599770
    828161 8wkp:AS4P (4.62) BS01 rna ? GO:0003723 ... P39467 38599770
    828162 8wkp:AS5P (4.62) BS01 rna ? GO:0003723 ... O05641 38599770
    828163 8wkp:AS5P (4.62) BS02 UNK ? GO:0003723 ... O05641 38599770
    828164 8wkp:AS5P (4.62) BS03 UNK ? GO:0003723 ... O05641 38599770
    828165 8wkp:AS6E (4.62) BS01 rna ? GO:0003735 ... Q4JAI1 38599770
    828166 8wkp:AS7P (4.62) BS01 rna ? GO:0000028 ... P17198 38599770
    828167 8wkp:AS8E (4.62) BS01 rna ? GO:0000462 ... Q4JAP5 38599770
    828168 8wkp:AS8P (4.62) BS01 rna ? GO:0003735 ... O05636 38599770
    828169 8wkp:AS9P (4.62) BS01 rna ? GO:0000462 ... P39468 38599770
    828170 8wkp:S10P (4.62) BS01 rna ? GO:0000049 ... P17199 38599770
    828171 8wkp:S11P (4.62) BS01 rna ? GO:0003735 ... P39469 38599770
    828172 8wkp:S11P (4.62) BS02 rna ? GO:0003735 ... P39469 38599770
    828173 8wkp:S12P (4.62) BS01 rna ? GO:0003735 ... P11524 38599770
    828174 8wkp:S13P (4.62) BS01 rna ? GO:0003676 ... P39470 38599770
    828175 8wkp:S14P (4.62) BS01 rna ? GO:0003723 ... O05635 38599770
    828176 8wkp:S15P (4.62) BS01 rna ? GO:0003735 ... Q4JAI3 38599770
    828177 8wkp:S17E (4.62) BS01 rna ? GO:0003735 ... Q4JAX5 38599770
    828178 8wkp:S17P (4.62) BS01 rna ? GO:0003735 ... Q4JB49 38599770
    828179 8wkp:S19E (4.62) BS01 rna ? GO:0000028 ... Q4J8U1 38599770
    828180 8wkp:S19P (4.62) BS01 rna ? GO:0003723 ... Q4JB44 38599770
    828181 8wkp:S24E (4.62) BS01 rna ? GO:0003735 ... Q4JAF9 38599770
    828182 8wkp:S27A (4.62) BS01 rna ? GO:0003735 ... Q4JAG0 38599770
    828183 8wkp:S27E (4.62) BS01 rna ? GO:0003735 ... Q4J9B1 38599770
    828184 8wkp:S28E (4.62) BS01 rna ? GO:0003735 ... Q4JAV1 38599770
    828185 8wkp:S3AE (4.62) BS01 rna ? GO:0003735 ... Q4JB17 38599770
    828186 8wkp:SL7A (4.62) BS01 rna ? GO:0001682 ... Q4J8P1 38599770
    828187 8wkr:A (2.05) BS01 LLP ? GO:0003824 ... A0A0G9F7S9 38568076
    828188 8wkr:A (2.05) BS02 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    828189 8wkr:B (2.05) BS01 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    828190 8wkr:B (2.05) BS02 LLP ? GO:0003824 ... A0A0G9F7S9 38568076
    828191 8wkr:C (2.05) BS01 LLP ? GO:0003824 ... A0A0G9F7S9 38568076
    828192 8wkr:C (2.05) BS02 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    828193 8wkr:D (2.05) BS01 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    828194 8wkr:D (2.05) BS02 LLP ? GO:0003824 ... A0A0G9F7S9 38568076
    828195 8wl7:A (1.74) BS01 ALL ? GO:0030246 ... A0A9W3L9M6 37820454
    828196 8wl9:A (1.93) BS01 RIP ? GO:0030246 ... A0A9W3L9M6 37820454
    828197 8wlb:A (1.71) BS01 WEB ? GO:0030246 ... A0A9W3L9M6 37820454
    828198 8wlk:A (3.37) BS01 EBZ ? GO:0001975 ... Q05940 N/A
    828199 8wll:A (3.74) BS01 YHR ? GO:0001975 ... Q05940 N/A
    828200 8wlm:A (3.57) BS01 SRO ? GO:0001975 ... Q05940 N/A
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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