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BioLiP Library
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    827001 8wax:q (2.75) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    827002 8wax:s (2.75) BS01 dna ? GO:0001054 ... I3LSI7 38127763
    827003 8wax:w (2.75) BS01 ZN ? GO:0000428 ... P60899 38127763
    827004 8wax:w (2.75) BS02 ZN ? GO:0000428 ... P60899 38127763
    827005 8wax:x (2.75) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    827006 8wax:z (2.75) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    827007 8way:o (2.85) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    827008 8way:o (2.85) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    827009 8way:o (2.85) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    827010 8way:o (2.85) BS04 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    827011 8way:o (2.85) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    827012 8way:o (2.85) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    827013 8way:o (2.85) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    827014 8way:o (2.85) BS08 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    827015 8way:p (2.85) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    827016 8way:p (2.85) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    827017 8way:p (2.85) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    827018 8way:p (2.85) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    827019 8way:q (2.85) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    827020 8way:s (2.85) BS01 dna ? GO:0001054 ... I3LSI7 38127763
    827021 8way:w (2.85) BS01 ZN ? GO:0000428 ... P60899 38127763
    827022 8way:w (2.85) BS02 ZN ? GO:0000428 ... P60899 38127763
    827023 8way:x (2.85) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    827024 8way:z (2.85) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    827025 8waz:o (2.76) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    827026 8waz:o (2.76) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    827027 8waz:o (2.76) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    827028 8waz:o (2.76) BS04 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    827029 8waz:o (2.76) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    827030 8waz:o (2.76) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    827031 8waz:o (2.76) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    827032 8waz:o (2.76) BS08 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    827033 8waz:p (2.76) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    827034 8waz:p (2.76) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    827035 8waz:p (2.76) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    827036 8waz:p (2.76) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    827037 8waz:q (2.76) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    827038 8waz:s (2.76) BS01 dna ? GO:0001054 ... I3LSI7 38127763
    827039 8waz:w (2.76) BS01 ZN ? GO:0000428 ... P60899 38127763
    827040 8waz:w (2.76) BS02 ZN ? GO:0000428 ... P60899 38127763
    827041 8waz:x (2.76) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    827042 8waz:z (2.76) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    827043 8wb0:o (2.94) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    827044 8wb0:o (2.94) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    827045 8wb0:o (2.94) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    827046 8wb0:o (2.94) BS04 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    827047 8wb0:o (2.94) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    827048 8wb0:o (2.94) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    827049 8wb0:o (2.94) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    827050 8wb0:o (2.94) BS08 W0F 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    827051 8wb0:p (2.94) BS01 dna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    827052 8wb0:p (2.94) BS02 rna 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    827053 8wb0:p (2.94) BS03 W0F 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    827054 8wb0:p (2.94) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38127763
    827055 8wb0:q (2.94) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    827056 8wb0:s (2.94) BS01 dna ? GO:0001054 ... I3LSI7 38127763
    827057 8wb0:w (2.94) BS01 ZN ? GO:0000428 ... P60899 38127763
    827058 8wb0:w (2.94) BS02 ZN ? GO:0000428 ... P60899 38127763
    827059 8wb0:x (2.94) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38127763
    827060 8wb0:z (2.94) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    827061 8wb2:A (1.9) BS01 HEM ? GO:0000325 ... Q9FGT8 38103756
    827062 8wb4:A (2.47) BS01 peptide 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    827063 8wb4:A (2.47) BS02 OEX 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    827064 8wb4:A (2.47) BS03 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    827065 8wb4:A (2.47) BS04 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    827066 8wb4:A (2.47) BS05 PHO 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    827067 8wb4:A (2.47) BS06 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    827068 8wb4:A (2.47) BS07 8CT 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    827069 8wb4:A (2.47) BS08 BCT 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    827070 8wb4:A (2.47) BS09 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    827071 8wb4:A (2.47) BS10 PHO 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    827072 8wb4:A (2.47) BS11 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    827073 8wb4:A (2.47) BS12 FE2 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    827074 8wb4:A (2.47) BS13 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    827075 8wb4:B (2.47) BS01 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827076 8wb4:B (2.47) BS02 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827077 8wb4:B (2.47) BS03 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827078 8wb4:B (2.47) BS04 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827079 8wb4:B (2.47) BS05 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827080 8wb4:B (2.47) BS06 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827081 8wb4:B (2.47) BS07 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827082 8wb4:B (2.47) BS08 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827083 8wb4:B (2.47) BS09 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827084 8wb4:B (2.47) BS10 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827085 8wb4:B (2.47) BS11 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827086 8wb4:B (2.47) BS12 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827087 8wb4:B (2.47) BS13 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827088 8wb4:B (2.47) BS14 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827089 8wb4:B (2.47) BS15 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827090 8wb4:B (2.47) BS16 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827091 8wb4:B (2.47) BS17 8CT ? GO:0009523 ... A0A222AIE3 38806516
    827092 8wb4:B (2.47) BS18 8CT ? GO:0009523 ... A0A222AIE3 38806516
    827093 8wb4:B (2.47) BS19 8CT ? GO:0009523 ... A0A222AIE3 38806516
    827094 8wb4:C (2.47) BS01 OEX ? GO:0005737 ... A0A222AI36 38806516
    827095 8wb4:C (2.47) BS02 8CT ? GO:0005737 ... A0A222AI36 38806516
    827096 8wb4:C (2.47) BS03 8CT ? GO:0005737 ... A0A222AI36 38806516
    827097 8wb4:C (2.47) BS04 CLA ? GO:0005737 ... A0A222AI36 38806516
    827098 8wb4:C (2.47) BS05 CLA ? GO:0005737 ... A0A222AI36 38806516
    827099 8wb4:C (2.47) BS06 CLA ? GO:0005737 ... A0A222AI36 38806516
    827100 8wb4:C (2.47) BS07 CLA ? GO:0005737 ... A0A222AI36 38806516
    827101 8wb4:C (2.47) BS08 CLA ? GO:0005737 ... A0A222AI36 38806516
    827102 8wb4:C (2.47) BS09 CLA ? GO:0005737 ... A0A222AI36 38806516
    827103 8wb4:C (2.47) BS10 CLA ? GO:0005737 ... A0A222AI36 38806516
    827104 8wb4:C (2.47) BS11 CLA ? GO:0005737 ... A0A222AI36 38806516
    827105 8wb4:C (2.47) BS12 CLA ? GO:0005737 ... A0A222AI36 38806516
    827106 8wb4:C (2.47) BS13 CLA ? GO:0005737 ... A0A222AI36 38806516
    827107 8wb4:C (2.47) BS14 CLA ? GO:0005737 ... A0A222AI36 38806516
    827108 8wb4:C (2.47) BS15 CLA ? GO:0005737 ... A0A222AI36 38806516
    827109 8wb4:C (2.47) BS16 CLA ? GO:0005737 ... A0A222AI36 38806516
    827110 8wb4:C (2.47) BS17 8CT ? GO:0005737 ... A0A222AI36 38806516
    827111 8wb4:D (2.47) BS01 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    827112 8wb4:D (2.47) BS02 PHO 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    827113 8wb4:D (2.47) BS03 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    827114 8wb4:D (2.47) BS04 PHO 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    827115 8wb4:D (2.47) BS05 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    827116 8wb4:D (2.47) BS06 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    827117 8wb4:D (2.47) BS07 FE2 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    827118 8wb4:D (2.47) BS08 8CT 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    827119 8wb4:D (2.47) BS09 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    827120 8wb4:E (2.47) BS01 peptide ? GO:0005506 ... A0A222AI74 38806516
    827121 8wb4:E (2.47) BS02 HEM ? GO:0005506 ... A0A222AI74 38806516
    827122 8wb4:F (2.47) BS01 peptide ? GO:0005506 ... A0A222AI51 38806516
    827123 8wb4:F (2.47) BS02 HEM ? GO:0005506 ... A0A222AI51 38806516
    827124 8wb4:H (2.47) BS01 8CT ? GO:0009523 ... A0A222AIE4 38806516
    827125 8wb4:H (2.47) BS02 CLA ? GO:0009523 ... A0A222AIE4 38806516
    827126 8wb4:H (2.47) BS03 CLA ? GO:0009523 ... A0A222AIE4 38806516
    827127 8wb4:H (2.47) BS04 CLA ? GO:0009523 ... A0A222AIE4 38806516
    827128 8wb4:I (2.47) BS01 CLA ? GO:0005737 ... A0A222AI80 38806516
    827129 8wb4:I (2.47) BS02 CLA ? GO:0005737 ... A0A222AI80 38806516
    827130 8wb4:I (2.47) BS03 8CT ? GO:0005737 ... A0A222AI80 38806516
    827131 8wb4:K (2.47) BS01 8CT ? GO:0005737 ... A0A222AIA0 38806516
    827132 8wb4:K (2.47) BS02 8CT ? GO:0005737 ... A0A222AIA0 38806516
    827133 8wb4:K (2.47) BS03 CLA ? GO:0005737 ... A0A222AIA0 38806516
    827134 8wb4:K (2.47) BS04 CLA ? GO:0005737 ... A0A222AIA0 38806516
    827135 8wb4:M (2.47) BS01 8CT ? N/A L1IFP3 38806516
    827136 8wb4:V (2.47) BS01 HEM ? N/A A0A222AI35 38806516
    827137 8wb4:X (2.47) BS01 CLA ? GO:0009523 ... A0A222AI61 38806516
    827138 8wb4:Y (2.47) BS01 8CT ? GO:0009523 ... A0A222AI69 38806516
    827139 8wb4:Z (2.47) BS01 8CT ? GO:0009523 ... A0A222AI96 38806516
    827140 8wb4:Z (2.47) BS02 KC2 ? GO:0009523 ... A0A222AI96 38806516
    827141 8wb4:a (2.47) BS01 peptide 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    827142 8wb4:a (2.47) BS02 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    827143 8wb4:a (2.47) BS03 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    827144 8wb4:a (2.47) BS04 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    827145 8wb4:a (2.47) BS05 PHO 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    827146 8wb4:a (2.47) BS06 BCT 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    827147 8wb4:a (2.47) BS07 OEX 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    827148 8wb4:a (2.47) BS08 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    827149 8wb4:a (2.47) BS09 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    827150 8wb4:a (2.47) BS10 PHO 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    827151 8wb4:a (2.47) BS11 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    827152 8wb4:a (2.47) BS12 8CT 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    827153 8wb4:b (2.47) BS01 8CT ? GO:0009523 ... A0A222AIE3 38806516
    827154 8wb4:b (2.47) BS02 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827155 8wb4:b (2.47) BS03 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827156 8wb4:b (2.47) BS04 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827157 8wb4:b (2.47) BS05 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827158 8wb4:b (2.47) BS06 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827159 8wb4:b (2.47) BS07 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827160 8wb4:b (2.47) BS08 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827161 8wb4:b (2.47) BS09 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827162 8wb4:b (2.47) BS10 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827163 8wb4:b (2.47) BS11 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827164 8wb4:b (2.47) BS12 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827165 8wb4:b (2.47) BS13 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827166 8wb4:b (2.47) BS14 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827167 8wb4:b (2.47) BS15 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827168 8wb4:b (2.47) BS16 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827169 8wb4:b (2.47) BS17 CLA ? GO:0009523 ... A0A222AIE3 38806516
    827170 8wb4:b (2.47) BS18 8CT ? GO:0009523 ... A0A222AIE3 38806516
    827171 8wb4:b (2.47) BS19 8CT ? GO:0009523 ... A0A222AIE3 38806516
    827172 8wb4:c (2.47) BS01 CLA ? GO:0005737 ... A0A222AI36 38806516
    827173 8wb4:c (2.47) BS02 CLA ? GO:0005737 ... A0A222AI36 38806516
    827174 8wb4:c (2.47) BS03 CLA ? GO:0005737 ... A0A222AI36 38806516
    827175 8wb4:c (2.47) BS04 CLA ? GO:0005737 ... A0A222AI36 38806516
    827176 8wb4:c (2.47) BS05 CLA ? GO:0005737 ... A0A222AI36 38806516
    827177 8wb4:c (2.47) BS06 CLA ? GO:0005737 ... A0A222AI36 38806516
    827178 8wb4:c (2.47) BS07 CLA ? GO:0005737 ... A0A222AI36 38806516
    827179 8wb4:c (2.47) BS08 CLA ? GO:0005737 ... A0A222AI36 38806516
    827180 8wb4:c (2.47) BS09 CLA ? GO:0005737 ... A0A222AI36 38806516
    827181 8wb4:c (2.47) BS10 CLA ? GO:0005737 ... A0A222AI36 38806516
    827182 8wb4:c (2.47) BS11 CLA ? GO:0005737 ... A0A222AI36 38806516
    827183 8wb4:c (2.47) BS12 CLA ? GO:0005737 ... A0A222AI36 38806516
    827184 8wb4:c (2.47) BS13 CLA ? GO:0005737 ... A0A222AI36 38806516
    827185 8wb4:c (2.47) BS14 8CT ? GO:0005737 ... A0A222AI36 38806516
    827186 8wb4:c (2.47) BS15 8CT ? GO:0005737 ... A0A222AI36 38806516
    827187 8wb4:c (2.47) BS16 8CT ? GO:0005737 ... A0A222AI36 38806516
    827188 8wb4:c (2.47) BS17 OEX ? GO:0005737 ... A0A222AI36 38806516
    827189 8wb4:d (2.47) BS01 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    827190 8wb4:d (2.47) BS02 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    827191 8wb4:d (2.47) BS03 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    827192 8wb4:d (2.47) BS04 FE2 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    827193 8wb4:d (2.47) BS05 8CT 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    827194 8wb4:d (2.47) BS06 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    827195 8wb4:d (2.47) BS07 PHO 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    827196 8wb4:d (2.47) BS08 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    827197 8wb4:d (2.47) BS09 PHO 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    827198 8wb4:e (2.47) BS01 peptide ? GO:0005506 ... A0A222AI74 38806516
    827199 8wb4:e (2.47) BS02 HEM ? GO:0005506 ... A0A222AI74 38806516
    827200 8wb4:f (2.47) BS01 peptide ? GO:0005506 ... A0A222AI51 38806516
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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