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BioLiP Library
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    826001 8w3w:D (1.976) BS01 A1AFO 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    826002 8w3x:A (1.765) BS01 A1AFH 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    826003 8w3x:B (1.765) BS01 A1AFH 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    826004 8w3x:C (1.765) BS01 A1AFH 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    826005 8w3x:D (1.765) BS01 A1AFH 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    826006 8w41:A (3.54) BS01 ADP ? GO:0000146 ... Q9UM54 38331992
    826007 8w41:B (3.54) BS01 CA ? GO:0000086 ... P0DP26 38331992
    826008 8w41:B (3.54) BS02 CA ? GO:0000086 ... P0DP26 38331992
    826009 8w41:B (3.54) BS03 CA ? GO:0000086 ... P0DP26 38331992
    826010 8w41:B (3.54) BS04 CA ? GO:0000086 ... P0DP26 38331992
    826011 8w42:A (1.45) BS01 STL ? N/A P02766 37910439
    826012 8w42:B (1.45) BS01 STL ? N/A P02766 37910439
    826013 8w43:A (1.302) BS01 PIT ? N/A P02766 37910439
    826014 8w43:B (1.302) BS01 PIT ? N/A P02766 37910439
    826015 8w44:A (1.399) BS01 EZE ? N/A P02766 37910439
    826016 8w44:B (1.399) BS01 EZE ? N/A P02766 37910439
    826017 8w44:B (1.399) BS02 EZE ? N/A P02766 37910439
    826018 8w45:A (1.1) BS01 8KZ ? N/A P02766 37910439
    826019 8w45:B (1.1) BS01 8KZ ? N/A P02766 37910439
    826020 8w46:A (1.35) BS01 3RL ? N/A P02766 37910439
    826021 8w46:B (1.35) BS01 3RL ? N/A P02766 37910439
    826022 8w46:B (1.35) BS02 3RL ? N/A P02766 37910439
    826023 8w47:A (1.4) BS01 P5O ? N/A P02766 37910439
    826024 8w47:B (1.4) BS01 P5O ? N/A P02766 37910439
    826025 8w48:A (1.19) BS01 PIT ? N/A P02766 37910439
    826026 8w48:B (1.19) BS01 PIT ? N/A P02766 37910439
    826027 8w4o:5 (3.23) BS01 ET4 ? GO:0009416 ... B5YLU3 38071196
    826028 8w4o:5 (3.23) BS02 A86 ? GO:0009416 ... B5YLU3 38071196
    826029 8w4o:5 (3.23) BS03 CLA ? GO:0009416 ... B5YLU3 38071196
    826030 8w4o:5 (3.23) BS04 CLA ? GO:0009416 ... B5YLU3 38071196
    826031 8w4o:5 (3.23) BS05 CLA ? GO:0009416 ... B5YLU3 38071196
    826032 8w4o:5 (3.23) BS06 CLA ? GO:0009416 ... B5YLU3 38071196
    826033 8w4o:5 (3.23) BS07 CLA ? GO:0009416 ... B5YLU3 38071196
    826034 8w4o:5 (3.23) BS08 CLA ? GO:0009416 ... B5YLU3 38071196
    826035 8w4o:5 (3.23) BS09 CLA ? GO:0009416 ... B5YLU3 38071196
    826036 8w4o:5 (3.23) BS10 CLA ? GO:0009416 ... B5YLU3 38071196
    826037 8w4o:5 (3.23) BS11 CLA ? GO:0009416 ... B5YLU3 38071196
    826038 8w4o:6 (3.23) BS01 CLA ? GO:0009416 ... B8BX93 38071196
    826039 8w4o:6 (3.23) BS02 CLA ? GO:0009416 ... B8BX93 38071196
    826040 8w4o:6 (3.23) BS03 A86 ? GO:0009416 ... B8BX93 38071196
    826041 8w4o:6 (3.23) BS04 DD6 ? GO:0009416 ... B8BX93 38071196
    826042 8w4o:6 (3.23) BS05 DD6 ? GO:0009416 ... B8BX93 38071196
    826043 8w4o:6 (3.23) BS06 CLA ? GO:0009416 ... B8BX93 38071196
    826044 8w4o:6 (3.23) BS07 CLA ? GO:0009416 ... B8BX93 38071196
    826045 8w4o:6 (3.23) BS08 CLA ? GO:0009416 ... B8BX93 38071196
    826046 8w4o:6 (3.23) BS09 CLA ? GO:0009416 ... B8BX93 38071196
    826047 8w4o:6 (3.23) BS10 CLA ? GO:0009416 ... B8BX93 38071196
    826048 8w4o:6 (3.23) BS11 CLA ? GO:0009416 ... B8BX93 38071196
    826049 8w4o:6 (3.23) BS12 CLA ? GO:0009416 ... B8BX93 38071196
    826050 8w4o:6 (3.23) BS13 CLA ? GO:0009416 ... B8BX93 38071196
    826051 8w4o:6 (3.23) BS14 CLA ? GO:0009416 ... B8BX93 38071196
    826052 8w4o:6 (3.23) BS15 CLA ? GO:0009416 ... B8BX93 38071196
    826053 8w4o:6 (3.23) BS16 CLA ? GO:0009416 ... B8BX93 38071196
    826054 8w4o:6 (3.23) BS17 CLA ? GO:0009416 ... B8BX93 38071196
    826055 8w4p:3 (3.48) BS01 A86 ? GO:0009416 ... B8BVI1 38071196
    826056 8w4p:3 (3.48) BS02 DD6 ? GO:0009416 ... B8BVI1 38071196
    826057 8w4p:3 (3.48) BS03 CLA ? GO:0009416 ... B8BVI1 38071196
    826058 8w4p:3 (3.48) BS04 CLA ? GO:0009416 ... B8BVI1 38071196
    826059 8w4p:3 (3.48) BS05 CLA ? GO:0009416 ... B8BVI1 38071196
    826060 8w4p:3 (3.48) BS06 CLA ? GO:0009416 ... B8BVI1 38071196
    826061 8w4p:3 (3.48) BS07 CLA ? GO:0009416 ... B8BVI1 38071196
    826062 8w4p:3 (3.48) BS08 CLA ? GO:0009416 ... B8BVI1 38071196
    826063 8w4p:3 (3.48) BS09 CLA ? GO:0009416 ... B8BVI1 38071196
    826064 8w4p:3 (3.48) BS10 CLA ? GO:0009416 ... B8BVI1 38071196
    826065 8w4p:3 (3.48) BS11 CLA ? GO:0009416 ... B8BVI1 38071196
    826066 8w4p:p (3.48) BS01 CLA ? GO:0009416 ... B8BUU4 38071196
    826067 8w4p:p (3.48) BS02 CLA ? GO:0009416 ... B8BUU4 38071196
    826068 8w4p:p (3.48) BS03 CLA ? GO:0009416 ... B8BUU4 38071196
    826069 8w4p:p (3.48) BS04 CLA ? GO:0009416 ... B8BUU4 38071196
    826070 8w4p:p (3.48) BS05 CLA ? GO:0009416 ... B8BUU4 38071196
    826071 8w4p:p (3.48) BS06 CLA ? GO:0009416 ... B8BUU4 38071196
    826072 8w4p:p (3.48) BS07 CLA ? GO:0009416 ... B8BUU4 38071196
    826073 8w4p:p (3.48) BS08 CLA ? GO:0009416 ... B8BUU4 38071196
    826074 8w4p:p (3.48) BS09 A86 ? GO:0009416 ... B8BUU4 38071196
    826075 8w4p:p (3.48) BS10 DD6 ? GO:0009416 ... B8BUU4 38071196
    826076 8w4q:A (1.55) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    826077 8w4q:A (1.55) BS02 3NG 3.1.4.53 GO:0004114 ... Q08499 37918035
    826078 8w4q:B (1.55) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    826079 8w4q:B (1.55) BS02 3NG 3.1.4.53 GO:0004114 ... Q08499 37918035
    826080 8w4r:A (1.37) BS01 AJR 3.1.4.53 GO:0004114 ... Q08499 37918035
    826081 8w4r:A (1.37) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    826082 8w4r:B (1.37) BS01 AJR 3.1.4.53 GO:0004114 ... Q08499 37918035
    826083 8w4r:B (1.37) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    826084 8w4s:A (1.848) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 37918035
    826085 8w4s:A (1.848) BS02 AJR 3.1.4.35 GO:0004114 ... O76074 37918035
    826086 8w4t:A (2.199) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 37918035
    826087 8w4t:A (2.199) BS02 VZF 3.1.4.35 GO:0004114 ... O76074 37918035
    826088 8w4u:A (3.3) BS01 9MF ? GO:0005216 ... O43526 37857637
    826089 8w4u:A (3.3) BS02 PIO ? GO:0005216 ... O43526 37857637
    826090 8w4u:B (3.3) BS01 9MF ? GO:0005216 ... O43526 37857637
    826091 8w4u:B (3.3) BS02 PIO ? GO:0005216 ... O43526 37857637
    826092 8w4u:D (3.3) BS01 9MF ? GO:0005216 ... O43526 37857637
    826093 8w4u:D (3.3) BS02 PIO ? GO:0005216 ... O43526 37857637
    826094 8w4u:G (3.3) BS01 9MF ? GO:0005216 ... O43526 37857637
    826095 8w4u:G (3.3) BS02 PIO ? GO:0005216 ... O43526 37857637
    826096 8w4v:A (1.81) BS01 Q9O 3.6.4.10 GO:0005524 ... P07900 38665669
    826097 8w53:A (2.42816) BS01 UDP 2.4.1.- GO:0000166 ... B6EWZ1 38816433
    826098 8w53:B (2.42816) BS01 UDP 2.4.1.- GO:0000166 ... B6EWZ1 38816433
    826099 8w59:A (1.339) BS01 ZN 2.3.2.27 N/A P98170 N/A
    826100 8w59:A (1.339) BS02 ZN 2.3.2.27 N/A P98170 N/A
    826101 8w59:B (1.339) BS01 ZN 2.3.2.27 N/A P98170 N/A
    826102 8w59:B (1.339) BS02 ZN 2.3.2.27 N/A P98170 N/A
    826103 8w5a:A (1.65) BS01 ZN 2.3.2.27 N/A P98170 N/A
    826104 8w5a:A (1.65) BS02 ZN 2.3.2.27 N/A P98170 N/A
    826105 8w5a:B (1.65) BS01 ZN 2.3.2.27 N/A P98170 N/A
    826106 8w5a:B (1.65) BS02 ZN 2.3.2.27 N/A P98170 N/A
    826107 8w5k:F (3.6) BS01 46E ? GO:0005515 ... P23644 38360717
    826108 8w5k:I (3.6) BS01 46E ? GO:0005515 ... P23644 38360717
    826109 8w5z:A (1.55) BS01 peptide 2.8.2.20 GO:0006478 ... B7Q097 38354785
    826110 8w5z:A (1.55) BS02 A3P 2.8.2.20 GO:0006478 ... B7Q097 38354785
    826111 8w5z:A (1.55) BS03 1PS 2.8.2.20 GO:0006478 ... B7Q097 38354785
    826112 8w5z:A (1.55) BS04 1PS 2.8.2.20 GO:0006478 ... B7Q097 38354785
    826113 8w5z:A (1.55) BS05 1PS 2.8.2.20 GO:0006478 ... B7Q097 38354785
    826114 8w5z:A (1.55) BS06 1PS 2.8.2.20 GO:0006478 ... B7Q097 38354785
    826115 8w5z:C (1.55) BS01 peptide 2.8.2.20 GO:0006478 ... B7Q097 38354785
    826116 8w5z:C (1.55) BS02 peptide 2.8.2.20 GO:0006478 ... B7Q097 38354785
    826117 8w5z:C (1.55) BS03 A3P 2.8.2.20 GO:0006478 ... B7Q097 38354785
    826118 8w6c:A (2.7) BS01 NA ? GO:0005515 ... Q13183 38552027
    826119 8w6c:A (2.7) BS02 NA ? GO:0005515 ... Q13183 38552027
    826120 8w6c:A (2.7) BS03 Y01 ? GO:0005515 ... Q13183 38552027
    826121 8w6c:B (2.7) BS01 Y01 ? GO:0005515 ... Q13183 38552027
    826122 8w6c:B (2.7) BS02 Y01 ? GO:0005515 ... Q13183 38552027
    826123 8w6c:B (2.7) BS03 NA ? GO:0005515 ... Q13183 38552027
    826124 8w6c:B (2.7) BS04 NA ? GO:0005515 ... Q13183 38552027
    826125 8w6d:A (2.5) BS01 NA ? GO:0005515 ... Q13183 38552027
    826126 8w6d:A (2.5) BS02 Y01 ? GO:0005515 ... Q13183 38552027
    826127 8w6d:B (2.5) BS01 NA ? GO:0005515 ... Q13183 38552027
    826128 8w6d:B (2.5) BS02 Y01 ? GO:0005515 ... Q13183 38552027
    826129 8w6g:A (3.3) BS01 VIJ ? GO:0005515 ... Q13183 38552027
    826130 8w6g:A (3.3) BS02 Y01 ? GO:0005515 ... Q13183 38552027
    826131 8w6g:B (3.3) BS01 VIJ ? GO:0005515 ... Q13183 38552027
    826132 8w6g:B (3.3) BS02 Y01 ? GO:0005515 ... Q13183 38552027
    826133 8w6h:A (3.1) BS01 SO4 ? GO:0005886 ... Q9BZW2 38552027
    826134 8w6h:A (3.1) BS02 NA ? GO:0005886 ... Q9BZW2 38552027
    826135 8w6h:A (3.1) BS03 CLR ? GO:0005886 ... Q9BZW2 38552027
    826136 8w6h:B (3.1) BS01 SO4 ? GO:0005886 ... Q9BZW2 38552027
    826137 8w6h:B (3.1) BS02 NA ? GO:0005886 ... Q9BZW2 38552027
    826138 8w6h:B (3.1) BS03 CLR ? GO:0005886 ... Q9BZW2 38552027
    826139 8w6i:B (3.7) BS01 AGS ? GO:0000917 ... P0A9R7 N/A
    826140 8w6i:B (3.7) BS02 AGS ? GO:0000917 ... P0A9R7 N/A
    826141 8w6i:D (3.7) BS01 AGS ? GO:0000917 ... P0A9R7 N/A
    826142 8w6i:D (3.7) BS02 AGS ? GO:0000917 ... P0A9R7 N/A
    826143 8w6j:B (3.4) BS01 ATP ? GO:0000917 ... P0A9R7 N/A
    826144 8w6j:B (3.4) BS02 ATP ? GO:0000917 ... P0A9R7 N/A
    826145 8w6j:D (3.4) BS01 ATP ? GO:0000917 ... P0A9R7 N/A
    826146 8w6j:D (3.4) BS02 ATP ? GO:0000917 ... P0A9R7 N/A
    826147 8w6n:A (3.2) BS01 NA ? GO:0005886 ... Q9BZW2 38552027
    826148 8w6n:B (3.2) BS01 SO4 ? GO:0005886 ... Q9BZW2 38552027
    826149 8w6o:A (2.9) BS01 NA ? GO:0005886 ... Q9BZW2 38552027
    826150 8w6o:A (2.9) BS02 NA ? GO:0005886 ... Q9BZW2 38552027
    826151 8w6o:A (2.9) BS03 CLR ? GO:0005886 ... Q9BZW2 38552027
    826152 8w6o:B (2.9) BS01 NA ? GO:0005886 ... Q9BZW2 38552027
    826153 8w6o:B (2.9) BS02 NA ? GO:0005886 ... Q9BZW2 38552027
    826154 8w6o:B (2.9) BS03 CLR ? GO:0005886 ... Q9BZW2 38552027
    826155 8w6p:A (1.91) BS01 FUC 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    826156 8w6p:A (1.91) BS02 YA4 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    826157 8w6p:A (1.91) BS03 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    826158 8w6p:A (1.91) BS04 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    826159 8w6p:B (1.91) BS01 PO4 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    826160 8w6p:B (1.91) BS02 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    826161 8w6p:B (1.91) BS03 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    826162 8w6r:A (1.95) BS01 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    826163 8w6r:A (1.95) BS02 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    826164 8w6v:A (1.8) BS01 MG 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    826165 8w6v:B (1.8) BS01 MG 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    826166 8w6x:L (1.04) BS01 NFU 1.12.2.1 GO:0016491 ... P21852 37712026
    826167 8w6x:L (1.04) BS02 MG 1.12.2.1 GO:0016491 ... P21852 37712026
    826168 8w6x:L (1.04) BS03 SF4 1.12.2.1 GO:0016491 ... P21852 37712026
    826169 8w6x:S (1.04) BS01 SF4 1.12.2.1 GO:0009055 ... P21853 37712026
    826170 8w6x:S (1.04) BS02 SF4 1.12.2.1 GO:0009055 ... P21853 37712026
    826171 8w6x:S (1.04) BS03 F3S 1.12.2.1 GO:0009055 ... P21853 37712026
    826172 8w71:A (2.121) BS01 ISJ 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    826173 8w71:A (2.121) BS02 MG 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    826174 8w71:B (2.121) BS01 ISJ 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    826175 8w71:B (2.121) BS02 MG 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    826176 8w75:A (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    826177 8w75:B (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    826178 8w75:C (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    826179 8w75:D (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    826180 8w78:A (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    826181 8w78:A (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    826182 8w78:B (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    826183 8w78:B (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    826184 8w78:C (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    826185 8w78:C (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    826186 8w78:D (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    826187 8w78:D (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    826188 8w7d:A (2.81) BS01 7TG 2.4.2.14 GO:0000287 ... P0AG16 38051581
    826189 8w7d:B (2.81) BS01 7TG 2.4.2.14 GO:0000287 ... P0AG16 38051581
    826190 8w7d:C (2.81) BS01 7TG 2.4.2.14 GO:0000287 ... P0AG16 38051581
    826191 8w7d:D (2.81) BS01 7TG 2.4.2.14 GO:0000287 ... P0AG16 38051581
    826192 8w7f:A (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    826193 8w7f:B (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    826194 8w7f:C (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    826195 8w7f:D (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    826196 8w7h:A (1.85) BS01 XUH 2.4.2.1
    2.4.2.44    		 GO:0003824 ... Q8I3X4 38141766
    826197 8w7m:2 (4.12) BS01 ADP 3.6.4.12 GO:0000727 ... P29469 37730685
    826198 8w7m:2 (4.12) BS02 ZN 3.6.4.12 GO:0000727 ... P29469 37730685
    826199 8w7m:3 (4.12) BS01 dna 3.6.4.12 GO:0000727 ... P24279 37730685
    826200 8w7m:3 (4.12) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 37730685
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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