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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP Library
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    825601 8vsi:B (3.1) BS01 AOV 3.6.3.- GO:0005524 ... A0A376P7T7 38540742
    825602 8vsi:B (3.1) BS02 MG 3.6.3.- GO:0005524 ... A0A376P7T7 38540742
    825603 8vsi:B (3.1) BS03 AOV 3.6.3.- GO:0005524 ... A0A376P7T7 38540742
    825604 8vt7:A (2.66) BS01 GDP ? GO:0000226 ... Q13509 38609661
    825605 8vt7:B (2.66) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38609661
    825606 8vt7:F (2.66) BS01 GDP ? GO:0000226 ... Q13509 38609661
    825607 8vt7:J (2.66) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38609661
    825608 8vtj:L (2.81) BS01 BCL ? GO:0009772 ... Q3J1A5 N/A
    825609 8vtj:L (2.81) BS02 BPH ? GO:0009772 ... Q3J1A5 N/A
    825610 8vtj:L (2.81) BS03 BCL ? GO:0009772 ... Q3J1A5 N/A
    825611 8vtj:L (2.81) BS04 FE ? GO:0009772 ... Q3J1A5 N/A
    825612 8vtj:L (2.81) BS05 BPH ? GO:0009772 ... Q3J1A5 N/A
    825613 8vtj:L (2.81) BS06 BCL ? GO:0009772 ... Q3J1A5 N/A
    825614 8vtj:M (2.81) BS01 BCL ? GO:0009772 ... Q3J1A6 N/A
    825615 8vtj:M (2.81) BS02 BPH ? GO:0009772 ... Q3J1A6 N/A
    825616 8vtj:M (2.81) BS03 BCL ? GO:0009772 ... Q3J1A6 N/A
    825617 8vtj:M (2.81) BS04 FE ? GO:0009772 ... Q3J1A6 N/A
    825618 8vtj:M (2.81) BS05 BPH ? GO:0009772 ... Q3J1A6 N/A
    825619 8vtj:M (2.81) BS06 SPO ? GO:0009772 ... Q3J1A6 N/A
    825620 8vtj:M (2.81) BS07 BCL ? GO:0009772 ... Q3J1A6 N/A
    825621 8vtk:L (3.07) BS01 BPH ? GO:0009772 ... Q3J1A5 N/A
    825622 8vtk:L (3.07) BS02 BCL ? GO:0009772 ... Q3J1A5 N/A
    825623 8vtk:L (3.07) BS03 BPH ? GO:0009772 ... Q3J1A5 N/A
    825624 8vtk:L (3.07) BS04 BCL ? GO:0009772 ... Q3J1A5 N/A
    825625 8vtk:L (3.07) BS05 BCL ? GO:0009772 ... Q3J1A5 N/A
    825626 8vtk:M (3.07) BS01 BPH ? GO:0009772 ... Q3J1A6 N/A
    825627 8vtk:M (3.07) BS02 BCL ? GO:0009772 ... Q3J1A6 N/A
    825628 8vtk:M (3.07) BS03 BPH ? GO:0009772 ... Q3J1A6 N/A
    825629 8vtk:M (3.07) BS04 BCL ? GO:0009772 ... Q3J1A6 N/A
    825630 8vtk:M (3.07) BS05 SPO ? GO:0009772 ... Q3J1A6 N/A
    825631 8vtk:M (3.07) BS06 BCL ? GO:0009772 ... Q3J1A6 N/A
    825632 8vtl:L (3.05) BS01 BPH ? GO:0009772 ... P0C0Y8 N/A
    825633 8vtl:L (3.05) BS02 BCL ? GO:0009772 ... P0C0Y8 N/A
    825634 8vtl:L (3.05) BS03 BCL ? GO:0009772 ... P0C0Y8 N/A
    825635 8vtl:L (3.05) BS04 FE ? GO:0009772 ... P0C0Y8 N/A
    825636 8vtl:L (3.05) BS05 BPH ? GO:0009772 ... P0C0Y8 N/A
    825637 8vtl:L (3.05) BS06 BCL ? GO:0009772 ... P0C0Y8 N/A
    825638 8vtl:M (3.05) BS01 BPH ? GO:0009772 ... P0C0Y9 N/A
    825639 8vtl:M (3.05) BS02 BCL ? GO:0009772 ... P0C0Y9 N/A
    825640 8vtl:M (3.05) BS03 BCL ? GO:0009772 ... P0C0Y9 N/A
    825641 8vtl:M (3.05) BS04 FE ? GO:0009772 ... P0C0Y9 N/A
    825642 8vtl:M (3.05) BS05 SPO ? GO:0009772 ... P0C0Y9 N/A
    825643 8vtl:M (3.05) BS06 BPH ? GO:0009772 ... P0C0Y9 N/A
    825644 8vtl:M (3.05) BS07 BCL ? GO:0009772 ... P0C0Y9 N/A
    825645 8vtm:L (3.51) BS01 BCL ? GO:0009772 ... Q3J1A5 N/A
    825646 8vtm:L (3.51) BS02 BCL ? GO:0009772 ... Q3J1A5 N/A
    825647 8vtm:L (3.51) BS03 FE ? GO:0009772 ... Q3J1A5 N/A
    825648 8vtm:L (3.51) BS04 BPH ? GO:0009772 ... Q3J1A5 N/A
    825649 8vtm:L (3.51) BS05 BPH ? GO:0009772 ... Q3J1A5 N/A
    825650 8vtm:L (3.51) BS06 BCL ? GO:0009772 ... Q3J1A5 N/A
    825651 8vtm:M (3.51) BS01 BCL ? GO:0009772 ... Q3J1A6 N/A
    825652 8vtm:M (3.51) BS02 BCL ? GO:0009772 ... Q3J1A6 N/A
    825653 8vtm:M (3.51) BS03 FE ? GO:0009772 ... Q3J1A6 N/A
    825654 8vtm:M (3.51) BS04 BPH ? GO:0009772 ... Q3J1A6 N/A
    825655 8vtm:M (3.51) BS05 SPO ? GO:0009772 ... Q3J1A6 N/A
    825656 8vtm:M (3.51) BS06 BPH ? GO:0009772 ... Q3J1A6 N/A
    825657 8vtm:M (3.51) BS07 BCL ? GO:0009772 ... Q3J1A6 N/A
    825658 8vtn:L (3.57) BS01 BCL ? GO:0009772 ... P0C0Y8 N/A
    825659 8vtn:L (3.57) BS02 BCL ? GO:0009772 ... P0C0Y8 N/A
    825660 8vtn:L (3.57) BS03 FE ? GO:0009772 ... P0C0Y8 N/A
    825661 8vtn:L (3.57) BS04 BPH ? GO:0009772 ... P0C0Y8 N/A
    825662 8vtn:L (3.57) BS05 BPH ? GO:0009772 ... P0C0Y8 N/A
    825663 8vtn:L (3.57) BS06 BCL ? GO:0009772 ... P0C0Y8 N/A
    825664 8vtn:M (3.57) BS01 BCL ? GO:0009772 ... P0C0Y9 N/A
    825665 8vtn:M (3.57) BS02 BCL ? GO:0009772 ... P0C0Y9 N/A
    825666 8vtn:M (3.57) BS03 FE ? GO:0009772 ... P0C0Y9 N/A
    825667 8vtn:M (3.57) BS04 BPH ? GO:0009772 ... P0C0Y9 N/A
    825668 8vtn:M (3.57) BS05 SPO ? GO:0009772 ... P0C0Y9 N/A
    825669 8vtn:M (3.57) BS06 BPH ? GO:0009772 ... P0C0Y9 N/A
    825670 8vtn:M (3.57) BS07 BCL ? GO:0009772 ... P0C0Y9 N/A
    825671 8vto:L (3.09) BS01 BPH ? GO:0009772 ... P0C0Y8 N/A
    825672 8vto:L (3.09) BS02 BCL ? GO:0009772 ... P0C0Y8 N/A
    825673 8vto:L (3.09) BS03 BPH ? GO:0009772 ... P0C0Y8 N/A
    825674 8vto:L (3.09) BS04 BCL ? GO:0009772 ... P0C0Y8 N/A
    825675 8vto:L (3.09) BS05 FE ? GO:0009772 ... P0C0Y8 N/A
    825676 8vto:L (3.09) BS06 BCL ? GO:0009772 ... P0C0Y8 N/A
    825677 8vto:M (3.09) BS01 BPH ? GO:0009772 ... P0C0Y9 N/A
    825678 8vto:M (3.09) BS02 BCL ? GO:0009772 ... P0C0Y9 N/A
    825679 8vto:M (3.09) BS03 BPH ? GO:0009772 ... P0C0Y9 N/A
    825680 8vto:M (3.09) BS04 BCL ? GO:0009772 ... P0C0Y9 N/A
    825681 8vto:M (3.09) BS05 FE ? GO:0009772 ... P0C0Y9 N/A
    825682 8vto:M (3.09) BS06 SPO ? GO:0009772 ... P0C0Y9 N/A
    825683 8vto:M (3.09) BS07 BCL ? GO:0009772 ... P0C0Y9 N/A
    825684 8vts:B (1.91) BS01 RIO ? GO:0003677 ... Q60954 39183959
    825685 8vts:D (1.91) BS01 RIO ? GO:0003677 ... Q60954 39183959
    825686 8vtt:D (2.45) BS01 RIO ? GO:0003677 ... Q60954 39183959
    825687 8vuw:A (3.19) BS01 PGW ? GO:0004888 ... P0C7B7 36385237
    825688 8vuw:A (3.19) BS02 DHL ? GO:0004888 ... P0C7B7 36385237
    825689 8vuw:B (3.19) BS01 PGW ? GO:0004888 ... P0C7B7 36385237
    825690 8vuw:B (3.19) BS02 DHL ? GO:0004888 ... P0C7B7 36385237
    825691 8vuw:C (3.19) BS01 PGW ? GO:0004888 ... P0C7B7 36385237
    825692 8vuw:C (3.19) BS02 DHL ? GO:0004888 ... P0C7B7 36385237
    825693 8vuw:D (3.19) BS01 PGW ? GO:0004888 ... P0C7B7 36385237
    825694 8vuw:D (3.19) BS02 DHL ? GO:0004888 ... P0C7B7 36385237
    825695 8vuw:E (3.19) BS01 PGW ? GO:0004888 ... P0C7B7 36385237
    825696 8vuw:E (3.19) BS02 DHL ? GO:0004888 ... P0C7B7 36385237
    825697 8vv3:A (2.61) BS01 SOE ? GO:0001582 ... B3GTD7 38447670
    825698 8vv3:B (2.61) BS01 SOE ? GO:0001582 ... B3GTD7 38447670
    825699 8vv3:C (2.61) BS01 SOE ? GO:0001582 ... B3GTD7 38447670
    825700 8vv3:D (2.61) BS01 SOE ? GO:0001582 ... B3GTD7 38447670
    825701 8vw0:A (1.7) BS01 AMP 6.3.2.9 GO:0005515 ... P14900 N/A
    825702 8vw0:A (1.7) BS02 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    825703 8vw0:A (1.7) BS03 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    825704 8vw0:A (1.7) BS04 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    825705 8vw0:A (1.7) BS05 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    825706 8vw1:A (1.7) BS01 ADP 6.3.2.9 GO:0005515 ... P14900 N/A
    825707 8vw1:A (1.7) BS02 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    825708 8vw1:A (1.7) BS03 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    825709 8vw1:A (1.7) BS04 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    825710 8vw2:A (1.95) BS01 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    825711 8vw2:A (1.95) BS02 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    825712 8vw2:A (1.95) BS03 CA 6.3.2.9 GO:0005515 ... P14900 N/A
    825713 8vw2:A (1.95) BS04 ATP 6.3.2.9 GO:0005515 ... P14900 N/A
    825714 8vw2:A (1.95) BS05 MG 6.3.2.9 GO:0005515 ... P14900 N/A
    825715 8vx0:A (3.05) BS01 LSN 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 38852293
    825716 8vx0:A (3.05) BS02 LSN 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 38852293
    825717 8vx0:A (3.05) BS03 HEM 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 38852293
    825718 8vxa:A (2.79) BS01 dna ? GO:0003676 ... A0A426EXV0 38464307
    825719 8vxa:A (2.79) BS02 dna ? GO:0003676 ... A0A426EXV0 38464307
    825720 8vxc:A (2.93) BS01 dna ? GO:0003676 ... A0A426EXV0 38464307
    825721 8vxc:A (2.93) BS02 dna ? GO:0003676 ... A0A426EXV0 38464307
    825722 8vxd:A (2.47) BS01 A1AD7 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P48730 38628796
    825723 8vxd:B (2.47) BS01 A1AD7 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P48730 38628796
    825724 8vxe:A (1.85) BS01 A1AD9 2.7.11.24 GO:0000077 ... Q16539 38628796
    825725 8vxe:A (1.85) BS02 A1AD9 2.7.11.24 GO:0000077 ... Q16539 38628796
    825726 8vxf:A (2.28) BS01 A1AD8 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P48730 38628796
    825727 8vxf:B (2.28) BS01 A1AD8 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P48730 38628796
    825728 8vxu:A (2.29) BS01 16A ? GO:0005886 ... U2EQ00 38865266
    825729 8vxu:B (2.29) BS01 16A ? GO:0005886 ... U2EQ00 38865266
    825730 8vxu:C (2.29) BS01 16A ? GO:0005886 ... U2EQ00 38865266
    825731 8vxu:C (2.29) BS02 16A ? GO:0005886 ... U2EQ00 38865266
    825732 8vxu:D (2.29) BS01 16A ? GO:0005886 ... U2EQ00 38865266
    825733 8vxy:B (3.19) BS01 dna ? GO:0003676 ... A0A426EXV0 38464307
    825734 8vxy:B (3.19) BS02 dna ? GO:0003676 ... A0A426EXV0 38464307
    825735 8vxy:B (3.19) BS03 ATP ? GO:0003676 ... A0A426EXV0 38464307
    825736 8vy7:R (2.68) BS01 A1AEI ? GO:0001580 ... Q9NYV8 38600377
    825737 8vy7:R (2.68) BS02 CLR ? GO:0001580 ... Q9NYV8 38600377
    825738 8vy8:A (2.4) BS01 peptide ? GO:0005515 ... P60615 38347541
    825739 8vy8:B (2.4) BS01 peptide ? GO:0005515 ... P60615 38347541
    825740 8vy8:E (2.4) BS01 peptide ? GO:0005515 ... P60615 38347541
    825741 8vy8:E (2.4) BS02 peptide ? GO:0005515 ... P60615 38347541
    825742 8vy8:G (2.4) BS01 peptide ? GO:0005515 ... P60615 38347541
    825743 8vy8:G (2.4) BS02 peptide ? GO:0005515 ... P60615 38347541
    825744 8vy9:R (2.88) BS01 A1AEI ? GO:0001580 ... Q9NYV8 38600377
    825745 8vy9:R (2.88) BS02 CLR ? GO:0001580 ... Q9NYV8 38600377
    825746 8vyt:A (1.61) BS01 A1AHV ? N/A P03372 38830107
    825747 8vyt:B (1.61) BS01 A1AHV ? N/A P03372 38830107
    825748 8vyt:C (1.61) BS01 A1AHV ? N/A P03372 38830107
    825749 8vyt:D (1.61) BS01 A1AHV ? N/A P03372 38830107
    825750 8vyx:A (1.69) BS01 A1AHU ? N/A P03372 38830107
    825751 8vyx:B (1.69) BS01 A1AHU ? N/A P03372 38830107
    825752 8vyx:C (1.69) BS01 A1AHU ? N/A P03372 38830107
    825753 8vyx:D (1.69) BS01 A1AHU ? N/A P03372 38830107
    825754 8vz0:A (1.86) BS01 A1AHO ? N/A P03372 38830107
    825755 8vz0:B (1.86) BS01 A1AHO ? N/A P03372 38830107
    825756 8vz0:C (1.86) BS01 A1AHO ? N/A P03372 38830107
    825757 8vz0:D (1.86) BS01 A1AHO ? N/A P03372 38830107
    825758 8vz1:A (1.82) BS01 A1AHS ? N/A P03372 38830107
    825759 8vz1:B (1.82) BS01 A1AHS ? N/A P03372 38830107
    825760 8vz1:C (1.82) BS01 A1AHS ? N/A P03372 38830107
    825761 8vz1:D (1.82) BS01 A1AHS ? N/A P03372 38830107
    825762 8vz4:A (1.25) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    825763 8vz4:B (1.25) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    825764 8vz7:A (2.53) BS01 HEM 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 38852293
    825765 8vz7:A (2.53) BS02 LSN 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 38852293
    825766 8vz7:A (2.53) BS03 LSN 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 38852293
    825767 8vz7:A (2.53) BS04 FRU 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53    		 GO:0004497 ... P11712 38852293
    825768 8vz8:A (3.45) BS01 2LJ ? N/A Q8HWB0 38537698
    825769 8vz9:A (3.4) BS01 2LJ ? N/A Q8HWB0 38537698
    825770 8vzl:A (2.41) BS01 dna 6.5.1.1 N/A P18858 38522520
    825771 8vzl:A (2.41) BS02 dna 6.5.1.1 N/A P18858 38522520
    825772 8vzl:A (2.41) BS03 dna 6.5.1.1 N/A P18858 38522520
    825773 8vzl:A (2.41) BS04 AMP 6.5.1.1 N/A P18858 38522520
    825774 8vzm:A (2.51) BS01 dna 6.5.1.1 N/A P18858 38522520
    825775 8vzm:A (2.51) BS02 dna 6.5.1.1 N/A P18858 38522520
    825776 8vzm:A (2.51) BS03 dna 6.5.1.1 N/A P18858 38522520
    825777 8vzm:A (2.51) BS04 AMP 6.5.1.1 N/A P18858 38522520
    825778 8vzn:A (2.77) BS01 CHT ? GO:0001701 ... Q91X85 38693257
    825779 8vzo:A (2.49) BS01 CHT ? GO:0001701 ... Q91X85 38693257
    825780 8vzp:A (1.72) BS01 A1AHW ? N/A P03372 38830107
    825781 8vzp:B (1.72) BS01 A1AHW ? N/A P03372 38830107
    825782 8vzp:C (1.72) BS01 A1AHW ? N/A P03372 38830107
    825783 8vzp:D (1.72) BS01 A1AHW ? N/A P03372 38830107
    825784 8vzq:A (1.75) BS01 A1AHX ? N/A P03372 38830107
    825785 8vzq:B (1.75) BS01 A1AHX ? N/A P03372 38830107
    825786 8vzq:C (1.75) BS01 A1AHX ? N/A P03372 38830107
    825787 8vzq:D (1.75) BS01 A1AHX ? N/A P03372 38830107
    825788 8vzx:C (1.47) BS01 A1AEQ ? GO:0005501 ... P50120 39046136
    825789 8vzx:D (1.47) BS01 A1AEQ ? GO:0005501 ... P50120 39046136
    825790 8vzy:A (1.34) BS01 A1AEQ ? GO:0005501 ... P50120 39046136
    825791 8vzz:A (1.22) BS01 A1AEQ ? GO:0005501 ... P50120 39046136
    825792 8vzz:B (1.22) BS01 A1AEQ ? GO:0005501 ... P50120 39046136
    825793 8w00:A (1.23) BS01 A1AEQ ? GO:0005501 ... P50120 39046136
    825794 8w00:B (1.23) BS01 A1AEQ ? GO:0005501 ... P50120 39046136
    825795 8w02:B (1.499) BS01 A1AEQ ? GO:0005501 ... P50120 39046136
    825796 8w03:A (1.68) BS01 OBT ? N/A P03372 38830107
    825797 8w03:B (1.68) BS01 OBT ? N/A P03372 38830107
    825798 8w03:C (1.68) BS01 OBT ? N/A P03372 38830107
    825799 8w03:D (1.68) BS01 OBT ? N/A P03372 38830107
    825800 8w07:A (1.83) BS01 A1AHY ? N/A P03372 38830107
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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