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Structure of PDB 5y6p Chain cH

Receptor sequence >5y6pcH (length=177) Species: 35689 (Griffithsia pacifica) [Search protein sequence] MLDAFSRVVVNSDSKAAYVGGSDLQSLKTFISDGNKRLDAVNCIVSNASC IVSDAISGMICENPGLIAPGGNCYTNRRMAACLRDGEIILRYVSYALLAG DSSVLDDRCLNGLKETYIALGVPTASTSRAVSIMKAASTAFIMNTASGRK IEIAAGDCQALQSEAAAYFDKVGSAVD

3D structure PDB 5y6p Structure of phycobilisome from the red alga Griffithsia pacifica Chain cH Resolution 3.5 Å 3D structure [Spin on] [Spin off] [Reset orientation] [High quality] [Low quality] [White background] [Black background] [Download] [Download structure with residue number starting from 1]

Interaction with ligand Site # Ligand Ligand chain Binding residues on receptor (original residue number in PDB) Binding residues on receptor (residue number reindexed from 1) Binding affinity BS01 PEB cH K36 D39 A155 G156 C158 K36 D39 A155 G156 C158 BS02 PUB cH C50 D54 G58 C61 A136 C50 D54 G58 C61 A136 BS03 PEB cH C73 R78 A81 C82 R84 D85 C109 L113 Y117 V122 P123 T127 C73 R78 A81 C82 R84 D85 C109 L113 Y117 V122 P123 T127

Gene Ontology --> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Thu May 22 19:44:11 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

/var/www/html/BioLiP/pdb.cgi in <module>()

1709                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

1710         else:

=> 1711             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

1712

1713     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '5y6p', asym_id = 'cH', title = 'Structure of phycobilisome from the red alga Griffithsia pacifica'

/var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='5y6p', asym_id='cH', title='Structure of phycobilisome from the red alga Griffithsia pacifica')

843

844     if go:

=>  845         display_go(go,uniprot,pdbid,asym_id)

846     return pubmed,uniprot

847

global display_go = <function display_go>, go = '0015979,0030089', uniprot = '', pdbid = '5y6p', asym_id = 'cH'

/var/www/html/BioLiP/pdb.cgi in display_go(go='0015979,0030089', uniprot='', pdbid='5y6p', asym_id='cH')

484         '''.replace("$namespace_link",namespace_link

485           ).replace("$namespace",namespace

=>  486           ).replace("$uniprot",u

487         ))

488         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>