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Structure of PDB 5y6p Chain X9

Receptor sequence >5y6pX9 (length=331) Species: 35689 (Griffithsia pacifica) [Search protein sequence] LGTVLGNSSLDKLGLDKFVDRFEVNEAGRPDGFSADYEVIIRACYMQIFA NAYIMESERAEMAKAESEFRDGRFTVKEFCRALAKSYQYRKRFFDGRPLY GAIELCFKHILGRTPDGLEHYRAKSAVYDTKGYEAFIDAFFDDGEYDAFY DSYCVPFYRGHLTTSNLSMAAFTHMFQVVRGSSTSDKANPRTMTNQITLN QAGIQSIPLAVVAPGADGATFLAPDASAGSWQTGFSGATKARTSHGSRQE KGKMFRIEVANNTQYSAVGGGSGIKLQSRSGKFYKMRNMAPAKVSTFRRA NNVYLVPFDELSATYIKIHKNGGSIASITPV

3D structure PDB 5y6p Structure of phycobilisome from the red alga Griffithsia pacifica Chain X9 Resolution 3.5 Å 3D structure [Spin on] [Spin off] [Reset orientation] [High quality] [Low quality] [White background] [Black background] [Download] [Download structure with residue number starting from 1]

Interaction with ligand Site # Ligand Ligand chain Binding residues on receptor (original residue number in PDB) Binding residues on receptor (residue number reindexed from 1) Binding affinity BS01 PEB X9 N91 Y93 S225 K227 N51 Y53 S185 K187 BS02 PEB X9 S270 W271 H285 S230 W231 H245 BS03 PEB X9 Q304 Y305 S335 R338 Q264 Y265 S295 R298 BS04 PEB X9 S49 T203 M209 S9 T163 M169 BS05 PEB X9 K104 S107 E108 R110 K64 S67 E68 R70

Gene Ontology --> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Thu May 22 22:31:30 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

/var/www/html/BioLiP/pdb.cgi in <module>()

1709                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

1710         else:

=> 1711             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

1712

1713     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '5y6p', asym_id = 'X9', title = 'Structure of phycobilisome from the red alga Griffithsia pacifica'

/var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='5y6p', asym_id='X9', title='Structure of phycobilisome from the red alga Griffithsia pacifica')

843

844     if go:

=>  845         display_go(go,uniprot,pdbid,asym_id)

846     return pubmed,uniprot

847

global display_go = <function display_go>, go = '0015979,0030089', uniprot = '', pdbid = '5y6p', asym_id = 'X9'

/var/www/html/BioLiP/pdb.cgi in display_go(go='0015979,0030089', uniprot='', pdbid='5y6p', asym_id='X9')

484         '''.replace("$namespace_link",namespace_link

485           ).replace("$namespace",namespace

=>  486           ).replace("$uniprot",u

487         ))

488         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>