BioLiP

Structure of PDB 8ib5 Chain F

Receptor sequence

>8ib5F (length=426) Species: 10090 (Mus musculus) [Search protein sequence]

FGSLKDEDRIFTNLYGRHDWRLKGALRRGDWYKTKEILLKGPDWILGEMK
TSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIM
RHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGL
IGKNACGSDYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPA
DVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGH
VNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSV
CETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQ
CTPCREGVDWMNKVMARFVKGDARPAEIDSLWEISKQIEGHTICALGDGA
AWPVQGLIRHFRPELEDRMQRFAQQH

3D structure

PDB

8ib5 Respiratory complex Peripheral Arm of CI, focus-refined map of type IA, Wild type mouse under cold temperature

Chain

Resolution

3.3 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	peptide	F	Y163 A166 Q170 V171 R174 R199	Y132 A135 Q139 V140 R143 R168
BS02	FMN	F	G89 K98 N116 D118 E119 Y204 G207 E208 A243 N244 T247 A426 L427	G58 K67 N85 D87 E88 Y173 G176 E177 A212 N213 T216 A395 L396
BS03	SF4	F	P223 S378 C379 G380 Q381 C382 C385 T423 C425 L427	P192 S347 C348 G349 Q350 C351 C354 T392 C394 L396

External links

PDB	RCSB:8ib5, PDBe:8ib5, PDBj:8ib5
PDBsum	8ib5
PubMed
UniProt	Q91YT0\|NDUV1_MOUSE NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial (Gene Name=Ndufv1)

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