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BioLiP

Structure of PDB 8hq8 Chain D

Receptor sequence
>8hq8D (length=223) Species: 325651 (Bryopsis corticulans) [Search protein sequence]
VEFYGPDRALWLGPYSEGAVPSYLTGEFPGDYGWDSAGLSADPETFAANR
ELELIHARWAMLGTVGCLTPEALEKYGGVEFGEAVWFKAGSQIFAEGGLD
YLGNPSLVHAQSILAICWTQVVLMGLAEGYRCSGGPLGEATDPLYPGEAF
DPMGMADDPETFAELKTKEIKNGRLAMFAMFGFFVQSLQTGKGPVECWAE
HIADPVANNGFVYATKFFGAQIF
3D structure
PDB8hq8 Structural and functional properties of different types of siphonous LHCII trimers from an intertidal green alga Bryopsis corticulans.
ChainD
Resolution2.6 Å
3D
structure
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Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 0IE D W34 D35 S36 A37 W59 A60 G63 G66 C67 W86 M177 M180 W34 D35 S36 A37 W59 A60 G63 G66 C67 W86 M177 M180
BS02 0IE D Q189 G210 F211 K216 F217 F218 Q189 G210 F211 K216 F217 F218
BS03 CHL D W11 L12 G13 Y32 W34 W11 L12 G13 Y32 W34
BS04 CHL D G30 D31 Y32 W34 L39 S40 N49 R50 E53 R174 M177 F178 F181 G30 D31 Y32 W34 L39 S40 N49 R50 E53 R174 M177 F178 F181
BS05 CLA D L52 H56 F184 L52 H56 F184
BS06 CLA D W59 L62 V65 G66 P70 F81 Y101 L102 W59 L62 V65 G66 P70 F81 Y101 L102
BS07 CHL D S106 L107 V108 H109 A110 Q111 S112 S106 L107 V108 H109 A110 Q111 S112
BS08 CHL D W59 G90 L99 I116 Q120 W59 G90 L99 I116 Q120
BS09 CHL D F87 G90 S91 F94 C117 Q120 F184 F87 G90 S91 F94 C117 Q120 F184
BS10 CHL D R58 W59 Y130 R131 G135 L137 G138 A140 P146 F150 R58 W59 Y130 R131 G135 L137 G138 A140 P146 F150
BS11 CHL D E51 L52 I55 H56 W59 Q120 M124 G125 E128 R131 E51 L52 I55 H56 W59 Q120 M124 G125 E128 R131
BS12 CLA D R58 M61 Y145 P146 G147 F150 M155 L165 E169 N172 R58 M61 Y145 P146 G147 F150 M155 L165 E169 N172
BS13 CLA D F3 K168 K171 N172 L175 F3 K168 K171 N172 L175
BS14 CLA D K168 N172 L175 K168 N172 L175
BS15 CLA D F178 F181 G182 V185 Q186 T190 C197 H201 N208 G210 Y213 F178 F181 G182 V185 Q186 T190 C197 H201 N208 G210 Y213
BS16 CHL D W198 H201 P205 N209 F211 W198 H201 P205 N209 F211
BS17 0UR D M61 T64 F150 D151 P152 M153 M155 A179 F183 Q186 P194 M61 T64 F150 D151 P152 M153 M155 A179 F183 Q186 P194
BS18 CHL D A214 F217 F223 A214 F217 F223
BS19 CHL D W34 S36 W34 S36
BS20 0IE D C117 W118 V121 C117 W118 V121
BS21 CHL D L114 W118 L114 W118
Gene Ontology
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UnboundLocalError
Python 3.6.8: /usr/bin/python3
Thu May 22 21:42:40 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1709                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1710         else:
=> 1711             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1712     
   1713     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8hq8', asym_id = 'D', title = 'Structural and functional properties of differen...m an intertidal green alga Bryopsis corticulans. '
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8hq8', asym_id='D', title='Structural and functional properties of differen...m an intertidal green alga Bryopsis corticulans. ')
    843 
    844     if go:
=>  845         display_go(go,uniprot,pdbid,asym_id)
    846     return pubmed,uniprot
    847 
global display_go = <function display_go>, go = '0009765,0016020', uniprot = '', pdbid = '8hq8', asym_id = 'D'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009765,0016020', uniprot='', pdbid='8hq8', asym_id='D')
    484         '''.replace("$namespace_link",namespace_link
    485           ).replace("$namespace",namespace
=>  486           ).replace("$uniprot",u
    487         ))
    488         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>